当前解析结果
SmilChr03G001494| 统一新 Gene ID | SmilChr03G001494 |
|---|---|
| 名称 | SmilChr03G001494 |
| 描述 | uncharacterized SmilChr03G001494 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18231075 - 18233159 / + |
| NCBI Gene ID | LOC131017961 |
|---|---|
| GeneID | 131017961 |
| locus_tag | - |
| NCBI Name | LOC131017961 |
| 原始查询 | SmilChr03G001494 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0587600; species=rice; confidence=weak |
| 产物 | hit=Os03g0587600; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0587600- identity=48.8; qcov=0.141; evalue=9.49e-06; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017961 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057802700.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057802701.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802701.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802700.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802700.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18232063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr3:18232069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr3:18232430 |
G |
GA |
1bp_insertion | frameshift_variant | 5 | A20,B128,B58,B95,C87 |
Chr3:18232430 |
G |
GA |
1bp_insertion | CDS_variant | 5 | A20,B128,B58,B95,C87 |
Chr3:18232464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:18232506 |
AAT |
A |
2bp_deletion | frameshift_variant | 1 | B54 |
Chr3:18232506 |
AAT |
A |
2bp_deletion | CDS_variant | 1 | B54 |
Chr3:18232520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B22,C60 |
Chr3:18232704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B7,B83,B96,C67 |
Chr3:18232707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:18232724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B127,C16,D5 |
Chr3:18232762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。