Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001495`

染色体: Chr03 坐标: 18238920-18242405 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001495`
名称	SmilChr03G001495
描述	probable inactive receptor kinase At4g23740
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	18238920 - 18242405 / `-`

ID 对照

NCBI Gene ID	`LOC131017960`
GeneID	`131017960`
locus_tag	`-`
NCBI Name	`LOC131017960`
原始查询	`SmilChr03G001495`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive receptor kinase At4g23740
产物	probable inactive receptor kinase At4g23740
Arabidopsis	`AT4G23740` (AT4G23740) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828474] identity=64.1; qcov=0.96; evalue=0; confidence=high
Rice	`Os01g0223600` - identity=56.1; qcov=0.951; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131017960

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802699.1`
2	Nucleus	细胞核	0.00000	`XP_057802699.1`
3	Chromosome	染色体	0.00000	`XP_057802699.1`
4	Centromere	着丝粒	0.00000	`XP_057802699.1`
5	Chromatin	染色质	0.00000	`XP_057802699.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:18239178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B68,C41,C81,D2
`Chr3:18239199`	`TG`	`T`	1bp_deletion	frameshift_variant	1	A22
`Chr3:18239199`	`TG`	`T`	1bp_deletion	CDS_variant	1	A22
`Chr3:18239235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr3:18239263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:18239292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:18239373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B49,B87,C4,C82,D5
`Chr3:18239451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B49,B87,C4,C82,D5
`Chr3:18239628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:18239645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:18240809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr3:18241202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802699.1

618 aa

309

618

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 32-70 aa PF00560 LRR_1 101-122 aa PF00560 LRR_1 124-144 aa PF00560 LRR_1 148-170 aa PF00560 LRR_1 194-214 aa PF00069 Pkinase 335-597 aa PF07714 PK_Tyr_Ser-Thr 335-599 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802699.1`	Pfam	`PF08263`	LRRNT_2	Family	32	70	1.8e-07	32.0	Leucine rich repeat N-terminal domain
`XP_057802699.1`	Pfam	`PF00560`	LRR_1	Repeat	101	122	2.9e-12	44.9	Leucine Rich Repeat
`XP_057802699.1`	Pfam	`PF00560`	LRR_1	Repeat	124	144	2.9e-12	44.9	Leucine Rich Repeat
`XP_057802699.1`	Pfam	`PF00560`	LRR_1	Repeat	148	170	2.9e-12	44.9	Leucine Rich Repeat
`XP_057802699.1`	Pfam	`PF00560`	LRR_1	Repeat	194	214	2.9e-12	44.9	Leucine Rich Repeat
`XP_057802699.1`	Pfam	`PF00069`	Pkinase	Domain	335	597	1.8e-31	110.2	Protein kinase domain
`XP_057802699.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	335	599	5.5e-32	111.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946716.1
AAAACTATTGGTCATGACACACCATTAATAATCAGATATACATTCCAAATGAGAAATGTACCATCTACTGATCTACATTGTAGAAATATACAATAGCAAAATACTTTCCTTATCTTGGATCTTCCTTTTTGTTGTTTACCCAAAGCAAATTTAATAATTCCCTATGCCTCTGTGAGAGAAGAATTCTTACTTCCATTGGTATTTGGAAGCTACAACACTCTAAAACAAACAAAAACTTCTTCTGCTTCTGCTTCTCAGCT...

CDS

1 records

下载 CDS FASTA

LOC131017960
ATGGAGAAGCTCCAAGTTTACGCTTTGCATTTCATGGTGGGAAGCTTATTTCTTCTCTCAAAATTTCAAGAAACCGTTGCTGAAACAGTTCTCGAGAGCGACAAGCAAGCATTGTTGGATTTGGCCGACAAGATTCATCTCCCCCGCCGCCGTTTGAACTGGGATGAGCAGAGCTCAGTCTGCAAGAATTGGACAGGAATCGCATGCAACGGAGACGGAAGCAGAGTGACGTCAGTGCGGCTACCGGGAATCGGGTTTCA...

Protein

1 records

下载 Protein FASTA

XP_057802699.1
MEKLQVYALHFMVGSLFLLSKFQETVAETVLESDKQALLDLADKIHLPRRRLNWDEQSSVCKNWTGIACNGDGSRVTSVRLPGIGFHGPIPANTLSRLSALQILSLRSNGINGSFPLDLGNLKNLTFLYLQHNNFGGPLPLDFSLWRNLTIVNLSDNGFNGSIPRSISGLSHLVALNLANNSLTGEVPDLELPNLQLLNLSYNDLVGSVPGPMQRFPKSVFVGNSESLLDYNVSIVLAPREHNSRGKNVGRLSEKALLGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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