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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001497

染色体: Chr03 坐标: 18280630-18288688 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001497
名称SmilChr03G001497
描述cell division control protein 48 homolog C-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向18280630 - 18288688 / +

ID 对照

NCBI Gene IDLOC131017963
GeneID131017963
locus_tag-
NCBI NameLOC131017963
原始查询SmilChr03G001497

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cell division control protein 48 homolog C-like
产物cell division control protein 48 homolog C-like
ArabidopsisAT3G01610 (CDC48C)
cell division cycle 48C [Source:NCBI gene (formerly Entrezgene);Acc:821105]
identity=33.9; qcov=0.991; evalue=1.93e-86; confidence=low
RiceOs06g0109400
-
identity=35.6; qcov=0.981; evalue=3.38e-90; confidence=medium
GOGO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042254 (ribosome biogenesis); GO:0051973 (GO:0051973); GO:1990275 (preribosome binding)
KEGGsmil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
PfamPF00004 (AAA); PF05496 (RuvB_N)
InterPro-
eggNOG-
NRGeneID:131017963

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057802702.1
2 Cytoplasm 细胞质 0.60000 XP_057802702.1
3 Cytosol 细胞质基质 0.40000 XP_057802702.1
4 Chromosome 染色体 0.00000 XP_057802707.1
5 Centromere 着丝粒 0.00000 XP_057802707.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:18280772 G A EMS_canonical_SNV CDS_variant 1 B138
Chr3:18280782 G A EMS_canonical_SNV CDS_variant 1 D10
Chr3:18280789 G A EMS_canonical_SNV CDS_variant 1 C71
Chr3:18280845 C T EMS_canonical_SNV CDS_variant 2 A22,C27
Chr3:18280916 G A EMS_canonical_SNV CDS_variant 1 C23
Chr3:18280920 G A EMS_canonical_SNV CDS_variant 3 B41,C10,C74
Chr3:18281171 C T EMS_canonical_SNV CDS_variant 1 B75
Chr3:18281243 C T EMS_canonical_SNV stop_gained 5 B104,B12,B35,B55,D1
Chr3:18281243 C T EMS_canonical_SNV CDS_variant 5 B104,B12,B35,B55,D1
Chr3:18282266 G A EMS_canonical_SNV CDS_variant 3 A3,B67,C46
Chr3:18282342 G A EMS_canonical_SNV CDS_variant 5 B101,B131,B28,C48,C62
Chr3:18282353 G GC 1bp_insertion frameshift_variant 4 A6,B67,C45,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802702.1
705 aa
N
1
352
705
RuvB_N
AAA
AAA
C
PF05496 RuvB_N 142-213 aa PF00004 AAA 145-273 aa PF00004 AAA 432-514 aa
XP_057802703.1
701 aa
N
1
350
701
RuvB_N
AAA
AAA
C
PF05496 RuvB_N 142-213 aa PF00004 AAA 145-273 aa PF00004 AAA 432-510 aa
XP_057802704.1
678 aa
N
1
339
678
AAA
AAA
AAA
C
PF00004 AAA 145-179 aa PF00004 AAA 193-246 aa PF00004 AAA 405-487 aa
XP_057802706.1
674 aa
N
1
337
674
AAA
AAA
AAA
C
PF00004 AAA 145-179 aa PF00004 AAA 193-246 aa PF00004 AAA 405-483 aa
XP_057802707.1
662 aa
N
1
331
662
RuvB_N
AAA
C
PF05496 RuvB_N 142-213 aa PF00004 AAA 145-273 aa
XP_057802708.1
635 aa
N
1
318
635
AAA
AAA
C
PF00004 AAA 145-179 aa PF00004 AAA 193-246 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802702.1 Pfam PF05496 RuvB_N Domain 142 213 2.5e-11 44.3 Holliday junction DNA helicase RuvB P-loop domain
XP_057802702.1 Pfam PF00004 AAA Domain 145 273 5.4e-47 160.2 ATPase family associated with various cellular activities (AAA)
XP_057802702.1 Pfam PF00004 AAA Domain 432 514 5.4e-47 160.2 ATPase family associated with various cellular activities (AAA)
XP_057802703.1 Pfam PF05496 RuvB_N Domain 142 213 1.1e-11 45.5 Holliday junction DNA helicase RuvB P-loop domain
XP_057802703.1 Pfam PF00004 AAA Domain 145 273 1.5e-47 162.0 ATPase family associated with various cellular activities (AAA)
XP_057802703.1 Pfam PF00004 AAA Domain 432 510 1.5e-47 162.0 ATPase family associated with various cellular activities (AAA)
XP_057802704.1 Pfam PF00004 AAA Domain 145 179 2.3e-37 129.1 ATPase family associated with various cellular activities (AAA)
XP_057802704.1 Pfam PF00004 AAA Domain 193 246 2.3e-37 129.1 ATPase family associated with various cellular activities (AAA)
XP_057802704.1 Pfam PF00004 AAA Domain 405 487 2.3e-37 129.1 ATPase family associated with various cellular activities (AAA)
XP_057802706.1 Pfam PF00004 AAA Domain 145 179 6.4e-38 130.9 ATPase family associated with various cellular activities (AAA)
XP_057802706.1 Pfam PF00004 AAA Domain 193 246 6.4e-38 130.9 ATPase family associated with various cellular activities (AAA)
XP_057802706.1 Pfam PF00004 AAA Domain 405 483 6.4e-38 130.9 ATPase family associated with various cellular activities (AAA)
XP_057802707.1 Pfam PF05496 RuvB_N Domain 142 213 2.5e-07 31.3 Holliday junction DNA helicase RuvB P-loop domain
XP_057802707.1 Pfam PF00004 AAA Domain 145 273 1.9e-34 119.6 ATPase family associated with various cellular activities (AAA)
XP_057802708.1 Pfam PF00004 AAA Domain 145 179 7.7e-25 88.6 ATPase family associated with various cellular activities (AAA)
XP_057802708.1 Pfam PF00004 AAA Domain 193 246 7.7e-25 88.6 ATPase family associated with various cellular activities (AAA)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057946719.1
CAGTGCAACCCGGTTACAAGGTGCAACCGGTTGCTCCCAAGTTTTCGCGAGTGATGAATTTGAGACGACTAAGCATACTCCTCTGCTCCAACTTCCCCGAAGCATCACTCGGCTTCCGTGCAGGAGAGACGGTGCCATGGACGAGCCAACTAGGAAACGGCAAAAAATAGACGAGACTCGGAATGCGAGTAGGCAAATTGAGGTATTTAGGGCATCCGCTTCTGCTAGTTATTCGGATTCCAACGGTAGGGAACTCGATC...
XM_057946720.1
AGTGCAACCCGGTTACAAGGTGCAACCGGTTGCTCCCAAGTTTTCGCGAGTGATGAATTTGAGACGACTAAGCATACTCCTCTGCTCCAACTTCCCCGAAGCATCACTCGGCTTCCGTGCAGGAGAGACGGTGCCATGGACGAGCCAACTAGGAAACGGCAAAAAATAGACGAGACTCGGAATGCGAGTAGGCAAATTGAGGTATTTAGGGCATCCGCTTCTGCTAGTTATTCGGATTCCAACGGTAGGGAACTCGATCC...

CDS

6 records

下载 CDS FASTA
LOC131017963
ATGGACGAGCCAACTAGGAAACGGCAAAAAATAGACGAGACTCGGAATGCGAGTAGGCAAATTGAGGTATTTAGGGCATCCGCTTCTGCTAGTTATTCGGATTCCAACGGTAGGGAACTCGATCCTTCTAAGAGTGATGAATCTGGTGGTGATGGGAGTGAGACGCGCGACGGTGCGAGGAGGGATGCAAATGGGGTTAATGGGGCAATTATTGGGGATTTAGGGGGAGTTAATGAATTAGGCGGTGGTAAGAGAGAGAT...
LOC131017963
ATGGACGAGCCAACTAGGAAACGGCAAAAAATAGACGAGACTCGGAATGCGAGTAGGCAAATTGAGGTATTTAGGGCATCCGCTTCTGCTAGTTATTCGGATTCCAACGGTAGGGAACTCGATCCTTCTAAGAGTGATGAATCTGGTGGTGATGGGAGTGAGACGCGCGACGGTGCGAGGAGGGATGCAAATGGGGTTAATGGGGCAATTATTGGGGATTTAGGGGGAGTTAATGAATTAGGCGGTGGTAAGAGAGAGAT...

Protein

6 records

下载 Protein FASTA
XP_057802702.1
MDEPTRKRQKIDETRNASRQIEVFRASASASYSDSNGRELDPSKSDESGGDGSETRDGARRDANGVNGAIIGDLGGVNELGGGKREMNKNGDGEGRDVNKNNWPMFSDLGGYNIRNRIGKFREVIVPLHQWKLLRHFGAVPMTAILLHGPPGCGKTAMARALGNEAGVPFYETSAAALMPGVSGILELFCRAYMKAPSIVFIDELDALISEMGSLRPCPVKQLMACMDEREPVNDGSDSESGPGYVLMIGATSKPDALDP...
XP_057802703.1
MDEPTRKRQKIDETRNASRQIEVFRASASASYSDSNGRELDPSKSDESGGDGSETRDGARRDANGVNGAIIGDLGGVNELGGGKREMNKNGDGEGRDVNKNNWPMFSDLGGYNIRNRIGKFREVIVPLHQWKLLRHFGAVPMTAILLHGPPGCGKTAMARALGNEAGVPFYETSAAALMPGVSGILELFCRAYMKAPSIVFIDELDALISEMGSLRPCPVKQLMACMDEREPVNDGSDSESGPGYVLMIGATSKPDALDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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