Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001500`

染色体: Chr03 坐标: 18332396-18336861 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001500`
名称	SmilChr03G001500
描述	protein S-acyltransferase 11-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	18332396 - 18336861 / `+`

ID 对照

NCBI Gene ID	`LOC131017966`
GeneID	`131017966`
locus_tag	`-`
NCBI Name	`LOC131017966`
原始查询	`SmilChr03G001500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein S-acyltransferase 11-like
产物	protein S-acyltransferase 11-like
Arabidopsis	`AT3G18620` (AT3G18620) DHHC-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:821393] identity=54.5; qcov=0.977; evalue=6.71e-130; confidence=high
Rice	`Os04g0674450` - identity=53.5; qcov=0.805; evalue=2.45e-102; confidence=high
GO	GO:0016409 (palmitoyltransferase activity)
KEGG	-
Pfam	PF01529 (DHHC)
InterPro	-
eggNOG	-
NR	GeneID:131017966

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057802711.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057802711.1`
3	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057802711.1`
4	Nucleus	细胞核	0.00000	`XP_057802711.1`
5	Chromosome	染色体	0.00000	`XP_057802711.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:18333417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,C44,C46
`Chr3:18334507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr3:18334531`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C34
`Chr3:18334531`	`AC`	`A`	1bp_deletion	CDS_variant	1	C34
`Chr3:18334532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,B87,C82
`Chr3:18334533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr3:18335056`	`G`	`GGA`	2bp_insertion	frameshift_variant	2	A20,D3
`Chr3:18335056`	`G`	`GGA`	2bp_insertion	CDS_variant	2	A20,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802711.1

353 aa

176

353

DHHC

PF01529 DHHC 159-309 aa

XP_057802712.1

353 aa

176

353

DHHC

PF01529 DHHC 159-309 aa

XP_057802713.1

353 aa

176

353

DHHC

PF01529 DHHC 159-309 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802711.1`	Pfam	`PF01529`	DHHC	Family	159	309	1.1e-29	103.8	DHHC palmitoyltransferase
`XP_057802712.1`	Pfam	`PF01529`	DHHC	Family	159	309	1.1e-29	103.8	DHHC palmitoyltransferase
`XP_057802713.1`	Pfam	`PF01529`	DHHC	Family	159	309	1.1e-29	103.8	DHHC palmitoyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946729.1
GCCTGCGTAAGAATTTTGTGAAAAAAATAAAAGAAAAAAATTGATTTTGTGGAATCACTGTAAAATACAGTAATGAACGGAATAAGATTCTGCCTTTTGGCGCGGACGACTAACTAAGGTATATTATTTCCAAAAAAATCCCCAGTTTCTTCAATTTCCCTTTTTTGTTCACTTCAATTTTTGGGGATTTCTTGGTTCCATCGGCCATGGATTTCGCGAGCTCCGCCGGCCGCAGCTCCTCCGACTATGACATCGCTCAG...

XM_057946730.1
AGAATTTTGTGAAAAAAATAAAAGAAAAAAATTGATTTTGTGGAATCACTGTAAAATACAGTAATGAACGGAATAAGATTCTGCCTTTTGGCGCGGACGACTAACTAAGGTATATTATTTCCAAAAAAATCCCCAGTTTCTTCAATTTCCCTTTTTTGTTCACTTCAATTTTTGGGGATTTCTTGGTTCCATCGGCCATGGATTTCGCGAGCTCCGCCGGCCGCAGCTCCTCCGACTATGACATCGCTCAGGCGGAGCAA...

CDS

3 records

下载 CDS FASTA

LOC131017966
ATGGATTTCGCGAGCTCCGCCGGCCGCAGCTCCTCCGACTATGACATCGCTCAGGCGGAGCAAGGTCAATTGGCATCTGCTAGTGAGGACCGTGAAACAAATTGTTGGGGTTGTGGGCTTCGTGTTAGTGTTGCTGCTCATGCATCAGTTTTCAAATGTGGCTGGTGTGGAGCTATAACTAAGGAACATGTGGTGAAAAATAATAACATCCGATTGAGACGTTGGCTCGACCGTTGTTTTGTTACCATCGTCATTTCGTT...

Protein

3 records

下载 Protein FASTA

XP_057802711.1
MDFASSAGRSSSDYDIAQAEQGQLASASEDRETNCWGCGLRVSVAAHASVFKCGWCGAITKEHVVKNNNIRLRRWLDRCFVTIVISFMLFFICAGIWAVYPVIFSISYFCGVFHLAISVILSICTLSSFCLSAFQPAGVPPIIIWGSYPAVGQGGLQNYTFCHYCSKPKSPQAHHCRTCGTCVLGMDHHCPFIGNCVGSANHRCFILFLLSTVISTLYIVIMTFYSALHIWPPVEHKSLSKLSGFANPEFVFGVLKHNIL...

XP_057802712.1
MDFASSAGRSSSDYDIAQAEQGQLASASEDRETNCWGCGLRVSVAAHASVFKCGWCGAITKEHVVKNNNIRLRRWLDRCFVTIVISFMLFFICAGIWAVYPVIFSISYFCGVFHLAISVILSICTLSSFCLSAFQPAGVPPIIIWGSYPAVGQGGLQNYTFCHYCSKPKSPQAHHCRTCGTCVLGMDHHCPFIGNCVGSANHRCFILFLLSTVISTLYIVIMTFYSALHIWPPVEHKSLSKLSGFANPEFVFGVLKHNIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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