Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001503

染色体: Chr03 坐标: 18383325-18387316 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001503
名称SmilChr03G001503
描述uncharacterized protein At5g41620
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向18383325 - 18387316 / -

ID 对照

NCBI Gene IDLOC131017969
GeneID131017969
locus_tag-
NCBI NameLOC131017969
原始查询SmilChr03G001503

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述intracellular protein transporter USO1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834164]; symbol=AT5G41620; hit=AT5G41620; species=arabidopsis; confidence=medium
产物intracellular protein transporter USO1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834164]; symbol=AT5G41620; hit=AT5G41620; species=arabidopsis; confidence=medium
ArabidopsisAT5G41620 (AT5G41620)
intracellular protein transporter USO1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834164]
identity=45; qcov=0.914; evalue=4.6e-144; confidence=medium
RiceOs02g0260500 (SIP7)
-
identity=36; qcov=0.768; evalue=1.48e-79; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131017969

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057802714.1
2 Cytoskeleton 细胞骨架 0.80000 XP_057802714.1
3 Nucleus 细胞核 0.20000 XP_057802714.1
4 Nucleus membrane 核膜 0.20000 XP_057802714.1
5 Cytosol 细胞质基质 0.20000 XP_057802714.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:18383674 G A EMS_canonical_SNV CDS_variant 1 B73
Chr3:18383706 G A EMS_canonical_SNV CDS_variant 1 B131
Chr3:18383744 G A EMS_canonical_SNV CDS_variant 4 B12,B13,C58,D11
Chr3:18383942 G A EMS_canonical_SNV CDS_variant 4 A21,A7,B66,B80
Chr3:18383944 C T EMS_canonical_SNV CDS_variant 1 B75
Chr3:18384035 G A EMS_canonical_SNV CDS_variant 4 A20,C32,C68,D3
Chr3:18384078 G A EMS_canonical_SNV CDS_variant 2 A21,B66
Chr3:18384191 G A EMS_canonical_SNV CDS_variant 2 B13,C58
Chr3:18384220 G A EMS_canonical_SNV CDS_variant 1 C65
Chr3:18384288 G A EMS_canonical_SNV CDS_variant 1 C53
Chr3:18384329 G A EMS_canonical_SNV CDS_variant 1 D11
Chr3:18384356 C T EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057946731.1
AACTGAATCCAAATTCTACTAGTATATATTTAATCAAACAGTATAAAGGTTTGAATCCAAATTCATGTAACACGTCGCGTTCGGACATAGGAGTATTGAATGTCGGGGGGGACGATAAAAAAAACAAAAAACTTATTACAGAAGACAAATTTCTCTACGGCAGCAGTGATTGAGCAAGAAGAGAGCAGCAGCGAGGTAAACTAGATGGGCAAGCCAAGTTAGTGGGAAAGAGTATTTTTTTAAGGTGAGGGAGGAGAGAG...

CDS

1 records

下载 CDS FASTA
LOC131017969
ATGAAAAGTGGTGAAGAGACAGCCGAAAAAGGAGGAATTTTGGGGGAAAAGTTGAGGAGGGTGGGGAAAAGAGGGGGACAGACAACTCCAGTAGCATCATTTTGGAGATTTGAGCAATTAAAACTCTTGGAAGAAGAAGCAGCTCCTCCCACTAAACAATTGCAAGATTGTGGCAGAGGAAACCCTTGTCAAATTCCTTGTGTTTCTGCAAGAAAACTTGCTGCCACCCTTTGGGAACTGCATCACCACAAGCAACAGCT...

Protein

1 records

下载 Protein FASTA
XP_057802714.1
MKSGEETAEKGGILGEKLRRVGKRGGQTTPVASFWRFEQLKLLEEEAAPPTKQLQDCGRGNPCQIPCVSARKLAATLWELHHHKQQLDQMHHGGGGAPLPRLRRLNQEQLYKDKSGLEPLDPSPGSPDLPGSSSSLRRHVAATLMQHHRSTERNNRALQPVSPASYGSSMEIAPYNPAVTPTSSIEFKGRAGETSYSLRTSTELLKVLNRIWSLEEQHVSNMSLVKALKKELDHARSQIKALVREQQADRREMDELMEQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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