当前解析结果
SmilChr03G001504| 统一新 Gene ID | SmilChr03G001504 |
|---|---|
| 名称 | SmilChr03G001504 |
| 描述 | cation/H(+) antiporter 18-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18397894 - 18404947 / + |
| NCBI Gene ID | LOC131017970 |
|---|---|
| GeneID | 131017970 |
| locus_tag | - |
| NCBI Name | LOC131017970 |
| 原始查询 | SmilChr03G001504 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 18-like |
| 产物 | cation/H(+) antiporter 18-like |
| Arabidopsis | AT5G41610 (CHX18)cation/H+ exchanger 18 [Source:NCBI gene (formerly Entrezgene);Acc:834163] identity=64.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os05g0276100 (OsCHX14)- identity=61.9; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017970 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802715.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802715.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802715.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802715.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802715.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18401811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:18401812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B66 |
Chr3:18401869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B137,B41,B68,C19 |
Chr3:18401877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr3:18401883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,C32,C68,D3 |
Chr3:18401940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:18402668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,C9 |
Chr3:18402884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:18402990 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B108 |
Chr3:18402990 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B108 |
Chr3:18402993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr3:18403016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802715.1PF00999
Na_H_Exchanger 47-422 aa
PF23256
CHX17_2nd 483-609 aa
PF23259
CHX17_C 623-772 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802715.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 47 | 422 | 1.5e-65 | 222.3 | Sodium/hydrogen exchanger, transmembrane |
XP_057802715.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 483 | 609 | 4.8e-42 | 143.8 | Plant cation/H(+) antiporter domain |
XP_057802715.1 |
Pfam | PF23259 |
CHX17_C | Domain | 623 | 772 | 3.3e-26 | 92.8 | Plant cation/H(+) antiporter, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。