Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001506`

染色体: Chr03 坐标: 18410005-18415021 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001506`
名称	SmilChr03G001506
描述	cation/H(+) antiporter 18-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	18410005 - 18415021 / `-`

ID 对照

NCBI Gene ID	`LOC131017972`
GeneID	`131017972`
locus_tag	`-`
NCBI Name	`LOC131017972`
原始查询	`SmilChr03G001506`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation/H(+) antiporter 18-like
产物	cation/H(+) antiporter 18-like
Arabidopsis	`AT5G41610` (CHX18) cation/H+ exchanger 18 [Source:NCBI gene (formerly Entrezgene);Acc:834163] identity=66.8; qcov=0.979; evalue=0; confidence=high
Rice	`Os05g0276100` (OsCHX14) - identity=62.4; qcov=0.957; evalue=0; confidence=high
GO	GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C)
InterPro	-
eggNOG	-
NR	GeneID:131017972

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802721.1`
2	Nucleus	细胞核	0.00000	`XP_057802721.1`
3	Chromosome	染色体	0.00000	`XP_057802721.1`
4	Centromere	着丝粒	0.00000	`XP_057802721.1`
5	Chromatin	染色质	0.00000	`XP_057802721.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:18410392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:18410427`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,B98,C8
`Chr3:18410438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr3:18410557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:18410597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B7,C28
`Chr3:18410602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,C77
`Chr3:18410622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B18,B61,B85
`Chr3:18410673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:18410726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,C58
`Chr3:18410758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,B74,C58
`Chr3:18410780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:18410867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802721.1

807 aa

404

807

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 44-424 aa PF23256 CHX17_2nd 489-615 aa PF23259 CHX17_C 629-781 aa

XP_057802723.1

807 aa

404

807

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 44-424 aa PF23256 CHX17_2nd 489-615 aa PF23259 CHX17_C 629-781 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802721.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	44	424	5e-67	227.1	Sodium/hydrogen exchanger, transmembrane
`XP_057802721.1`	Pfam	`PF23256`	CHX17_2nd	Domain	489	615	4e-40	137.6	Plant cation/H(+) antiporter domain
`XP_057802721.1`	Pfam	`PF23259`	CHX17_C	Domain	629	781	2.6e-27	96.4	Plant cation/H(+) antiporter, C-terminal domain
`XP_057802723.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	44	424	5e-67	227.1	Sodium/hydrogen exchanger, transmembrane
`XP_057802723.1`	Pfam	`PF23256`	CHX17_2nd	Domain	489	615	4e-40	137.6	Plant cation/H(+) antiporter domain
`XP_057802723.1`	Pfam	`PF23259`	CHX17_C	Domain	629	781	2.6e-27	96.4	Plant cation/H(+) antiporter, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946738.1
AACAAAGGAAGTCAATTGCTATTGGCTTTATTTGGAATGGCTAGCGAAGCCCACCAAGACTCAATAAATAGTTGACGAGTTTGATCTAAGTATGCAACTCTCGCAAAAACCCTCTCCCACTCTCGCACTCTTCTCTCTCCCTCTCTCGCACTCTTCCTTTTCTTAACTCTAATCATTCTCTCTCTTCGACGAATACCAGTTCGATGGTCAACGAGGTCTGAGCGTGACAAGCAATCCTCTTCCCAGAACTCTCCAGCGAT...

XM_057946740.1
TCTTTTTTGTAACATGTCGACCAAAATATCACTTAAAGAATCAGTTGTTCGTGACCTGAAAAAATGGCATCGAATGGAACAGTAAAATGTCCAGCACCGATGAAGGCGACTTCTAATGGAGTCTTCCAAGGAGACGATCCTCTCGACTTTGCGCTGCCTCTGCTGATACTGCAGATATGCCTCGTGGTCGTGCTCACCAGAGTGCTCGCCTATCTCCTCAGGCCGTTGAGACAACCACGTGTCATTGCGGAGATTATTGG...

CDS

2 records

下载 CDS FASTA

LOC131017972
ATGGCATCGAATGGAACAGTAAAATGTCCAGCACCGATGAAGGCGACTTCTAATGGAGTCTTCCAAGGAGACGATCCTCTCGACTTTGCGCTGCCTCTGCTGATACTGCAGATATGCCTCGTGGTCGTGCTCACCAGAGTGCTCGCCTATCTCCTCAGGCCGTTGAGACAACCACGTGTCATTGCGGAGATTATTGGTGGAATAATACTAGGTCCATCTGTTTTAGGCCGCAATGAGAAGTATCTCCACACCATTTTCCC...

Protein

2 records

下载 Protein FASTA

XP_057802721.1
MASNGTVKCPAPMKATSNGVFQGDDPLDFALPLLILQICLVVVLTRVLAYLLRPLRQPRVIAEIIGGIILGPSVLGRNEKYLHTIFPARSLTVLDTVANLGLLFFLFLVGLEIDPASLRRTGKAALSIALAGITLPFALGIGTSFVFRATISTGVSQAPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWVLLALAIALSGTDHSPLVAVWVFLCGSGFIILCIFVGPPIFKWMSHRCPEGHQV...

XP_057802723.1
MASNGTVKCPAPMKATSNGVFQGDDPLDFALPLLILQICLVVVLTRVLAYLLRPLRQPRVIAEIIGGIILGPSVLGRNEKYLHTIFPARSLTVLDTVANLGLLFFLFLVGLEIDPASLRRTGKAALSIALAGITLPFALGIGTSFVFRATISTGVSQAPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWVLLALAIALSGTDHSPLVAVWVFLCGSGFIILCIFVGPPIFKWMSHRCPEGHQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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