当前解析结果
SmilChr03G001511| 统一新 Gene ID | SmilChr03G001511 |
|---|---|
| 名称 | SmilChr03G001511 |
| 描述 | UDP-glycosyltransferase 83A1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18517639 - 18520870 / - |
| NCBI Gene ID | LOC131017975 |
|---|---|
| GeneID | 131017975 |
| locus_tag | - |
| NCBI Name | LOC131017975 |
| 原始查询 | SmilChr03G001511 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 83A1-like |
| 产物 | UDP-glycosyltransferase 83A1-like |
| Arabidopsis | AT3G02100 (AT3G02100)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820287] identity=39.3; qcov=0.99; evalue=5.34e-107; confidence=medium |
| Rice | Os03g0757600- identity=40.4; qcov=0.983; evalue=7.38e-118; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017975 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802725.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802725.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802725.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802725.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802725.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18517819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:18517850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr3:18517855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr3:18517861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:18517903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,C20,C7,C76 |
Chr3:18518021 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr3:18518069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:18518076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:18518117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C77 |
Chr3:18518162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B14,C35,D1,D4 |
Chr3:18518190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C77 |
Chr3:18518200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C20,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802725.1PF26168
Glyco_transf_N 11-43 aa
PF00201
UDPGT 287-452 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802725.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 11 | 43 | 3.3e-10 | 41.0 | Glycosyltransferase, N-terminal domain |
XP_057802725.1 |
Pfam | PF00201 |
UDPGT | Family | 287 | 452 | 7e-23 | 81.9 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。