当前解析结果
SmilChr03G001516| 统一新 Gene ID | SmilChr03G001516 |
|---|---|
| 名称 | SmilChr03G001516 |
| 描述 | UDP-glycosyltransferase 83A1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18588190 - 18604907 / - |
| NCBI Gene ID | LOC131017981 |
|---|---|
| GeneID | 131017981 |
| locus_tag | - |
| NCBI Name | LOC131017981 |
| 原始查询 | SmilChr03G001516 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 83A1-like |
| 产物 | UDP-glycosyltransferase 83A1-like |
| Arabidopsis | AT3G02100 (AT3G02100)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820287] identity=41.1; qcov=0.985; evalue=4.28e-117; confidence=medium |
| Rice | Os03g0757600- identity=40.5; qcov=0.983; evalue=6.8e-115; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802729.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057802729.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802729.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802729.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802729.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18588526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B101,B68,C48,C62 |
Chr3:18588600 |
C |
CTG |
2bp_insertion | frameshift_variant | 1 | B69 |
Chr3:18588600 |
C |
CTG |
2bp_insertion | CDS_variant | 1 | B69 |
Chr3:18588625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr3:18588670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr3:18588672 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C36 |
Chr3:18588714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B101,B68,C48,C62 |
Chr3:18588814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:18588844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B28,B46 |
Chr3:18588895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B44,B63,B80,B83 |
Chr3:18589102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C74 |
Chr3:18589222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802729.1PF26168
Glyco_transf_N 11-50 aa
PF00201
UDPGT 284-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802729.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 11 | 50 | 1.4e-07 | 32.4 | Glycosyltransferase, N-terminal domain |
XP_057802729.1 |
Pfam | PF00201 |
UDPGT | Family | 284 | 442 | 2.7e-23 | 83.3 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。