当前解析结果
SmilChr03G001521| 统一新 Gene ID | SmilChr03G001521 |
|---|---|
| 名称 | SmilChr03G001521 |
| 描述 | putative wall-associated receptor kinase-like 16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18652653 - 18655228 / - |
| NCBI Gene ID | LOC131017985 |
|---|---|
| GeneID | 131017985 |
| locus_tag | - |
| NCBI Name | LOC131017985 |
| 原始查询 | SmilChr03G001521 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative wall-associated receptor kinase-like 16 |
| 产物 | putative wall-associated receptor kinase-like 16 |
| Arabidopsis | AT1G21270 (WAK2)wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=43.8; qcov=0.989; evalue=0; confidence=medium |
| Rice | Os02g0111600 (OsWAK11)- identity=42.6; qcov=0.949; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF08488 (WAK); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017985 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802731.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802731.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802731.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802731.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802731.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18652825 |
TG |
T |
1bp_deletion | frameshift_variant | 23 | A13,A14,A24,B103,B128,B138,B17,B32,B42,B43,B46,B50,B89,B97,C13,C16,C31,C54,C55,C57,C73,C84,D3 |
Chr3:18652868 |
T |
TGA |
2bp_insertion | frameshift_variant | 4 | B127,B15,B36,B43 |
Chr3:18652868 |
T |
TGA |
2bp_insertion | CDS_variant | 4 | B127,B15,B36,B43 |
Chr3:18652883 |
TC |
T |
1bp_deletion | frameshift_variant | 18 | B118,B127,B13,B15,B27,B29,B31,B35,B36,B43,B71,B77,B83,C26,C5,C59,C78,D9 |
Chr3:18652931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr3:18653003 |
A |
ATG |
2bp_insertion | frameshift_variant | 1 | C51 |
Chr3:18653003 |
A |
ATG |
2bp_insertion | CDS_variant | 1 | C51 |
Chr3:18653051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C48 |
Chr3:18653064 |
T |
TA |
1bp_insertion | frameshift_variant | 32 | A1,A20,A7,A9,B102,B105,B112,B114,B13,B131,B132,B138,B2,B33,B46,B48,B69,B7,B75,B80,B85,C1,C12,C15,C23,C39,C46,C52,C54,C60,C79,C82 |
Chr3:18653163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:18653181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,D11 |
Chr3:18653199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B13,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802731.1PF13947
GUB_WAK_bind 40-97 aa
PF08488
WAK 174-223 aa
PF00069
Pkinase 428-694 aa
PF07714
PK_Tyr_Ser-Thr 433-698 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802731.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 40 | 97 | 2.8e-09 | 37.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057802731.1 |
Pfam | PF08488 |
WAK | Family | 174 | 223 | 5.6e-05 | 24.3 | Wall-associated kinase |
XP_057802731.1 |
Pfam | PF00069 |
Pkinase | Domain | 428 | 694 | 1.5e-45 | 156.4 | Protein kinase domain |
XP_057802731.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 433 | 698 | 1.1e-43 | 150.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。