当前解析结果
SmilChr03G001533| 统一新 Gene ID | SmilChr03G001533 |
|---|---|
| 名称 | SmilChr03G001533 |
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 19179169 - 19182339 / - |
| NCBI Gene ID | LOC131018496 |
|---|---|
| GeneID | 131018496 |
| locus_tag | - |
| NCBI Name | LOC131018496 |
| 原始查询 | SmilChr03G001533 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 产物 | putative late blight resistance protein homolog R1B-14 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.1; qcov=1.07; evalue=1.37e-63; confidence=low |
| Rice | Os07g0186500- identity=28.9; qcov=0.94; evalue=5.17e-60; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018496 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057803196.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057803196.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803196.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803196.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803196.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:19179254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:19179277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr3:19179287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:19179302 |
ATG |
A |
2bp_deletion | frameshift_variant | 6 | B115,B20,B60,C44,C52,D9 |
Chr3:19179307 |
A |
ACC |
2bp_insertion | frameshift_variant | 9 | B115,B20,B60,B9,B96,C44,C48,C52,D9 |
Chr3:19179320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,C57,C70 |
Chr3:19179355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C57 |
Chr3:19179363 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B132,B31 |
Chr3:19179363 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B132,B31 |
Chr3:19179368 |
TGG |
T |
2bp_deletion | frameshift_variant | 22 | A19,B102,B115,B27,B38,B50,B7,B72,B76,B9,B96,C11,C13,C14,C19,C22,C44,C48,C74,D3,D4,D9 |
Chr3:19179370 |
GA |
G |
1bp_deletion | frameshift_variant | 19 | A14,B113,B43,B52,B59,B6,B7,C12,C21,C27,C30,C50,C52,C59,C62,C71,C74,C75,C84 |
Chr3:19179372 |
G |
GCC |
2bp_insertion | frameshift_variant | 21 | A19,B102,B115,B27,B38,B50,B7,B72,B76,B9,B96,C11,C13,C14,C19,C22,C44,C74,D3,D4,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803196.1PF00931
NB-ARC 93-252 aa
PF23559
WHD_DRP 331-395 aa
PF23598
LRR_14 426-629 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803196.1 |
Pfam | PF00931 |
NB-ARC | Domain | 93 | 252 | 5.6e-40 | 137.5 | NB-ARC domain |
XP_057803196.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 331 | 395 | 1.8e-16 | 60.6 | Disease resistance protein Winged helix domain |
XP_057803196.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 426 | 629 | 5.6e-18 | 65.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。