Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001549`

染色体: Chr03 坐标: 19536479-19539145 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001549`
名称	SmilChr03G001549
描述	aluminum-activated malate transporter 9-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	19536479 - 19539145 / `-`

ID 对照

NCBI Gene ID	`LOC131018011`
GeneID	`131018011`
locus_tag	`-`
NCBI Name	`LOC131018011`
原始查询	`SmilChr03G001549`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aluminum-activated malate transporter 9-like
产物	aluminum-activated malate transporter 9-like
Arabidopsis	`AT3G18440` (ALMT9) aluminum-activated malate transporter 9 [Source:NCBI gene (formerly Entrezgene);Acc:821373] identity=39.6; qcov=0.962; evalue=1.61e-113; confidence=medium
Rice	`Os01g0221600` (OsALMT4) - identity=65.2; qcov=0.996; evalue=0; confidence=high
GO	GO:0009705 (plant-type vacuole membrane); GO:0015743 (malate transport)
KEGG	-
Pfam	PF04632 (FUSC); PF11744 (ALMT); PF13515 (FUSC_2)
InterPro	-
eggNOG	-
NR	GeneID:131018011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802742.1`
2	Nucleus	细胞核	0.00000	`XP_057802742.1`
3	Chromosome	染色体	0.00000	`XP_057802742.1`
4	Centromere	着丝粒	0.00000	`XP_057802742.1`
5	Chromatin	染色质	0.00000	`XP_057802742.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:19536733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,B127
`Chr3:19536879`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B96
`Chr3:19536879`	`TC`	`T`	1bp_deletion	CDS_variant	1	B96
`Chr3:19536909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,C72
`Chr3:19536994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,C13
`Chr3:19537237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr3:19537878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,B59,B98
`Chr3:19538331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B25,B88
`Chr3:19538904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:19538939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B124,B18,B61,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802742.1

528 aa

264

528

ALMT

FUSC_2

FUSC

PF11744 ALMT 43-518 aa PF13515 FUSC_2 81-206 aa PF04632 FUSC 85-410 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802742.1`	Pfam	`PF11744`	ALMT	Family	43	518	4.3e-164	547.6	Aluminium activated malate transporter
`XP_057802742.1`	Pfam	`PF13515`	FUSC_2	Family	81	206	1.1e-10	42.4	Fusaric acid resistance protein-like
`XP_057802742.1`	Pfam	`PF04632`	FUSC	Family	85	410	2e-15	57.2	Fusaric acid resistance protein family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946759.1
GTATTATTCTATTTTTTTTTCCATATATCATATCCTGCTTGCCTCATCGAGTTGCATCAACCACTTAGCCAAAATCCCCCTCTTTAAATCACACTCATCTCCCCCATTTTTCACCTTATAAAGTTTCACTCACCCGTTGTTTCTGATCATCATCATCAACAAAGGTCCGGTTGGAGAATGAATGGCGTGAAAGGTAGCATTGAGATCAGCATCCCTCCTATCAGCAATGAGAAAAAAGCATCAGAAGCTAGCAAGAATAG...

CDS

1 records

下载 CDS FASTA

LOC131018011
ATGAATGGCGTGAAAGGTAGCATTGAGATCAGCATCCCTCCTATCAGCAATGAGAAAAAAGCATCAGAAGCTAGCAAGAATAGTAGTGATGAGAAATTCAGCTGCAAAAACTTCATTATGAGAGTGTGGGAGTTTTGCAAAGAAGATAGCAACAGAGTGACATTTTCACTCAAAGTGGGGATTGCTGTTCTTCTCGTATCTCTTCTGATACTATGCAGAGCGCCTTACCAAGTTTTCGGCACCAGCATTATCTGGTCCAT...

Protein

1 records

下载 Protein FASTA

XP_057802742.1
MNGVKGSIEISIPPISNEKKASEASKNSSDEKFSCKNFIMRVWEFCKEDSNRVTFSLKVGIAVLLVSLLILCRAPYQVFGTSIIWSILTVAIMFEYTVGATFNRGFNRALGSLLAGALAIAIAELALKAGRTAEPIIIGFSIFIVGTVTSFMKLWPSLVPYEYGFRVILFTYCLIIVSGYRMGNPIMTAMDRLYSIAIGAIVAVAVNVLIFPIWAGELLHKEIVSHFASLADALQECVGKYLKDDGSEHPEFTKTVMDDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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