Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001559

染色体: Chr03 坐标: 19658140-19659509 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001559
名称SmilChr03G001559
描述uncharacterized SmilChr03G001559
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向19658140 - 19659509 / +

ID 对照

NCBI Gene IDLOC131018019
GeneID131018019
locus_tag-
NCBI NameLOC131018019
原始查询SmilChr03G001559

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131018019

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057802746.1
2 Cytoplasm 细胞质 0.80000 XP_057802746.1
3 Cytosol 细胞质基质 0.60000 XP_057802746.1
4 Chromosome 染色体 0.00000 XP_057802746.1
5 Centromere 着丝粒 0.00000 XP_057802746.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:19658680 AT A 1bp_deletion frameshift_variant 2 B115,B21
Chr3:19658680 AT A 1bp_deletion CDS_variant 2 B115,B21
Chr3:19658893 T TGA 2bp_insertion frameshift_variant 29 A11,A20,A7,B1,B101,B118,B13,B17,B21,B24,B40,B68,B71,B73,B77,B80,B90,B92,C26,C28,C48,C53,C58,C59,C62,C74,C75,C80,D3
Chr3:19658896 TTC T 2bp_deletion frameshift_variant 29 A11,A20,A7,B1,B101,B118,B13,B17,B21,B24,B40,B68,B71,B73,B77,B80,B90,B92,C26,C28,C48,C53,C58,C59,C62,C74,C75,C80,D3
Chr3:19658934 A AGC 2bp_insertion frameshift_variant 1 D7
Chr3:19658934 A AGC 2bp_insertion CDS_variant 1 D7
Chr3:19659177 AT A 1bp_deletion frameshift_variant 2 B89,C29
Chr3:19659177 AT A 1bp_deletion CDS_variant 2 B89,C29
Chr3:19659180 G A EMS_canonical_SNV CDS_variant 5 A4,A8,B123,C25,C44
Chr3:19659182 A AT 1bp_insertion frameshift_variant 2 B89,C29
Chr3:19659182 A AT 1bp_insertion CDS_variant 2 B89,C29

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057946763.1
TCTCAAAGATCAGGATCCTCTGCCGCCCGTACGATCTGTATGCTTTCTGCCGTGAGTTTATATCTTCCAGTTTCGCAGCCGAGAACTCGTAAGCGTGTGAATATCCACGTCGAGAATCCATCTGCTTTAGGGAGTTCCATAGGTAACATCACCAACACCATCTTTAATTCTTTATCGGCTGGAAAAGTGAGGTTTGATTAGTGATGAGGGATTTTCAAGTGGGATATTCACAAAGCTACGAGTTTTTGCCTGCAAGACTG...
XM_057946764.1
AGTGAGGTGAGAAAGCCGTATGCTACTCAGACTTTCAGTGTTTGATTAGTGATGAGGGATTTTCAAGTGGGATATTCACAAAGCTACGAGTTTTTGCCTGCAAGACTGGAGGAGATTAGGTCACGGCAGAAAGCATACGCTGAGGCTGAGGGGCGTGAGAAAATCTTTTTGTTAGAGATGAGAAGCGAGTTCATGATGAGCGAGGGTGAGCAGATAACAAGAATCGGTAGTGAGCAATACGATATGACATGCTCGTGCGA...

CDS

2 records

下载 CDS FASTA
LOC131018019
ATGAGGGATTTTCAAGTGGGATATTCACAAAGCTACGAGTTTTTGCCTGCAAGACTGGAGGAGATTAGGTCACGGCAGAAAGCATACGCTGAGGCTGAGGGGCGTGAGAAAATCTTTTTGTTAGAGATGAGAAGCGAGTTCATGATGAGCGAGGGTGAGCAGATAACAAGAATCGGTAGTGAGCAATACGATATGACATGCTCGTGCGATGCAACGTCATTGTTTCACGAATTGAGGTGGAGGCTGGAGGAGTACCGTAT...
LOC131018019
ATGAGGGATTTTCAAGTGGGATATTCACAAAGCTACGAGTTTTTGCCTGCAAGACTGGAGGAGATTAGGTCACGGCAGAAAGCATACGCTGAGGCTGAGGGGCGTGAGAAAATCTTTTTGTTAGAGATGAGAAGCGAGTTCATGATGAGCGAGGGTGAGCAGATAACAAGAATCGGTAGTGAGCAATACGATATGACATGCTCGTGCGATGCAACGTCATTGTTTCACGAATTGAGGTGGAGGCTGGAGGAGTACCGTAT...

Protein

2 records

下载 Protein FASTA
XP_057802746.1
MRDFQVGYSQSYEFLPARLEEIRSRQKAYAEAEGREKIFLLEMRSEFMMSEGEQITRIGSEQYDMTCSCDATSLFHELRWRLEEYRMSMDGINKLCQELCAFGRQLVAVAEAGQACVAVIVRMDVVTVQREGESLDEVKMRALMPPKLSPLYVWSDQTVLRRVMNDKHMGTLWYLSICKPEGEDEGVCSICLFMRASIGAPITELECGCRFHSHCIIRKLERDNKCPHCAYQVFDAAYLTVSAPHQCYEPFNRNQDLAQY...
XP_057802747.1
MRDFQVGYSQSYEFLPARLEEIRSRQKAYAEAEGREKIFLLEMRSEFMMSEGEQITRIGSEQYDMTCSCDATSLFHELRWRLEEYRMSMDGINKLCQELCAFGRQLVAVAEAGQACVAVIVRMDVVTVQREGESLDEVKMRALMPPKLSPLYVWSDQTVLRRVMNDKHMGTLWYLSICKPEGEDEGVCSICLFMRASIGAPITELECGCRFHSHCIIRKLERDNKCPHCAYQVFDAAYLTVSAPHQCYEPFNRNQDLAQY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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