当前解析结果
SmilChr03G001564| 统一新 Gene ID | SmilChr03G001564 |
|---|---|
| 名称 | SmilChr03G001564 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 19757860 - 19758912 / + |
| NCBI Gene ID | LOC131018501 |
|---|---|
| GeneID | 131018501 |
| locus_tag | - |
| NCBI Name | LOC131018501 |
| 原始查询 | SmilChr03G001564 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT2G27110 (FRS3)FAR1-related sequence 3 [Source:NCBI gene (formerly Entrezgene);Acc:817253] identity=26.7; qcov=0.577; evalue=5.89e-22; confidence=low |
| Rice | Os11g0681300- identity=26.9; qcov=0.606; evalue=9.95e-21; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018501 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803202.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057803202.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803202.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803202.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803202.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:19757866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B4,C27,C44 |
Chr3:19757885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B14,D1 |
Chr3:19757988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr3:19758028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:19758065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr3:19758264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B32,B4,C44 |
Chr3:19758308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr3:19758323 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B120 |
Chr3:19758323 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B120 |
Chr3:19758324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:19758325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr3:19758362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。