Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001575`

染色体: Chr03 坐标: 19889017-19890757 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001575`
名称	SmilChr03G001575
描述	probable membrane-associated kinase regulator 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	19889017 - 19890757 / `-`

ID 对照

NCBI Gene ID	`LOC131018032`
GeneID	`131018032`
locus_tag	`-`
NCBI Name	`LOC131018032`
原始查询	`SmilChr03G001575`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable membrane-associated kinase regulator 2
产物	probable membrane-associated kinase regulator 2
Arabidopsis	`AT1G64080` (MAKR2) membrane-associated kinase regulator [Source:NCBI gene (formerly Entrezgene);Acc:842712] identity=35.2; qcov=1.01; evalue=1.34e-46; confidence=medium
Rice	`Os01g0226200` - identity=31.4; qcov=0.984; evalue=2.05e-32; confidence=low
GO	GO:0005198 (structural molecule activity); GO:0005886 (plasma membrane); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport); GO:0030130 (clathrin coat of trans-Golgi network vesicle); GO:0030132 (clathrin coat of coated pit)
KEGG	-
Pfam	PF30362 (MAKR5_C)
InterPro	-
eggNOG	-
NR	GeneID:131018032

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802756.1`
2	Cytosol	细胞质基质	0.60000	`XP_057802756.1`
3	Nucleus	细胞核	0.00000	`XP_057802756.1`
4	Chromosome	染色体	0.00000	`XP_057802756.1`
5	Centromere	着丝粒	0.00000	`XP_057802756.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:19889866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:19889922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:19890006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:19890054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,C46
`Chr3:19890087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B32,B57,C64,C66
`Chr3:19890093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr3:19890267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B35,B55
`Chr3:19890317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,D11
`Chr3:19890349`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B122
`Chr3:19890349`	`TC`	`T`	1bp_deletion	CDS_variant	1	B122
`Chr3:19890374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B9,C2,C85
`Chr3:19890525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802756.1

439 aa

220

439

MAKR5_C

PF30362 MAKR5_C 55-407 aa

XP_057802757.1

428 aa

214

428

MAKR5_C

PF30362 MAKR5_C 55-393 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802756.1`	Pfam	`PF30362`	MAKR5_C	Domain	55	407	6.6e-66	223.6	Membrane-associated kinase regulator 5 helix
`XP_057802757.1`	Pfam	`PF30362`	MAKR5_C	Domain	55	393	2.1e-63	215.3	Membrane-associated kinase regulator 5 helix

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946774.1
GATTCAACAAATTCATCGATTTTGCTTAACAACCCCCACTTTTATTATAAGCCCTTGCCACCCTTCTCTCTCTCTTCTCTCTCCTGGCTCTACCAACCATGGAAGCCTTCAGTTTACTCAAGTACTGGCGCGCCGGTGGCGGCGGCGGCCCCGGTGGAGCCACCGCCACCGCCACCGCCTTCACCGCCGCAAAGGCCACCACTAAAACCATCGTCGACGGTGCCGCCGCCGCCGGCGTCAGCCCTTACTCCTCCGAAAGC...

XM_057946773.1
ATTCAACAAATTCATCGATTTTGCTTAACAACCCCCACTTTTATTATAAGCCCTTGCCACCCTTCTCTCTCTCTTCTCTCTCCTGGCTCTACCAACCATGGAAGCCTTCAGTTTACTCAAGTACTGGCGCGCCGGTGGCGGCGGCGGCCCCGGTGGAGCCACCGCCACCGCCACCGCCTTCACCGCCGCAAAGGCCACCACTAAAACCATCGTCGACGGTGCCGCCGCCGCCGGCGTCAGCCCTTACTCCTCCGAAAGCG...

CDS

2 records

下载 CDS FASTA

LOC131018032
ATGGAAGCCTTCAGTTTACTCAAGTACTGGCGCGCCGGTGGCGGCGGCGGCCCCGGTGGAGCCACCGCCACCGCCACCGCCTTCACCGCCGCAAAGGCCACCACTAAAACCATCGTCGACGGTGCCGCCGCCGCCGGCGTCAGCCCTTACTCCTCCGAAAGCGAAGACGGCCCCTATTTCGACCTCGAATTCGCCCTACCTGACCACGAGAGCGACACCGACGAACAAGAACAAACCACCGCGGAATTACATGAAAACGA...

Protein

2 records

下载 Protein FASTA

XP_057802756.1
MEAFSLLKYWRAGGGGGPGGATATATAFTAAKATTKTIVDGAAAAGVSPYSSESEDGPYFDLEFALPDHESDTDEQEQTTAELHENDVVKTEDETESEEISVHENDDEEEEEDEAELKFSLTSNECTDQNAALSPSDDLFFKGDLVTIEPSSILLNGAEEENPKFPVFLGKSASKFRVLLLKLKKSKSVNGENPETPDSSGTPPKIAERENQGKTTSGKFFVKFKVEEAPPLVNLFSRDNSSKEIHGKAPTKQSCGGGVV...

XP_057802757.1
MEAFSLLKYWRAGGGGGPGGATATATAFTAAKATTKTIVDGAAAAGVSPYSSESEDGPYFDLEFALPDHESDTDEQEQTTAELHENDVVKTEDETESEEISVHENDDEEEEEDEAELKFSLTSNECTDQNAALSPSDDLFFKGDLVTIEPSSILLNGAEEENPKFPVFLGKSASKFRVLLLKLKKSKSVNGENPETPDSSGTPPKIAERENQGKTTSGKFFVKFKVEEAPPLVNLFSRDNSSKEIHGKAPTKQSCGGGVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器