当前解析结果
SmilChr03G001583| 统一新 Gene ID | SmilChr03G001583 |
|---|---|
| 名称 | SmilChr03G001583 |
| 描述 | respiratory burst oxidase homolog protein A-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 20028623 - 20038082 / - |
| NCBI Gene ID | LOC131018039 |
|---|---|
| GeneID | 131018039 |
| locus_tag | - |
| NCBI Name | LOC131018039 |
| 原始查询 | SmilChr03G001583 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | respiratory burst oxidase homolog protein A-like |
| 产物 | respiratory burst oxidase homolog protein A-like |
| Arabidopsis | AT1G64060 (RBOH F)respiratory burst oxidase protein F [Source:NCBI gene (formerly Entrezgene);Acc:842710] identity=78.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0528000 (rbohC)- identity=70.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0005509 (calcium ion binding); GO:0005886 (plasma membrane); GO:0016174 (NAD(P)H oxidase H2O2-forming activity) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01794 (Ferric_reduct); PF08022 (FAD_binding_8); PF08030 (NAD_binding_6); PF08414 (NADPH_Ox) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802764.1 |
| 2 | Dendrite | Dendrite | 0.20000 | XP_057802764.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802764.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802764.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802764.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:20028924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B1,B21,C53,C80 |
Chr3:20028930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:20029552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:20030263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:20030713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:20030725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:20030757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr3:20030825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr3:20030980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A24,B50,D3 |
Chr3:20032445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802764.1PF08414
NADPH_Ox 156-256 aa
PF01794
Ferric_reduct 425-572 aa
PF08022
FAD_binding_8 614-729 aa
PF08030
NAD_binding_6 735-920 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802764.1 |
Pfam | PF08414 |
NADPH_Ox | Family | 156 | 256 | 3e-39 | 134.1 | Respiratory burst NADPH oxidase |
XP_057802764.1 |
Pfam | PF01794 |
Ferric_reduct | Domain | 425 | 572 | 2.9e-11 | 44.2 | Ferric reductase like transmembrane component |
XP_057802764.1 |
Pfam | PF08022 |
FAD_binding_8 | Domain | 614 | 729 | 1.2e-36 | 125.8 | FAD-binding domain |
XP_057802764.1 |
Pfam | PF08030 |
NAD_binding_6 | Domain | 735 | 920 | 2.4e-51 | 174.6 | Ferric reductase NAD binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。