当前解析结果
SmilChr03G001598| 统一新 Gene ID | SmilChr03G001598 |
|---|---|
| 名称 | SmilChr03G001598 |
| 描述 | uncharacterized SmilChr03G001598 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 20304955 - 20305665 / - |
| NCBI Gene ID | LOC131018510 |
|---|---|
| GeneID | 131018510 |
| locus_tag | - |
| NCBI Name | LOC131018510 |
| 原始查询 | SmilChr03G001598 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=34.3; qcov=0.493; evalue=1.27e-06; confidence=low |
| Rice | Os12g0292200- identity=38.6; qcov=0.401; evalue=1.56e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018510 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803211.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803211.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803211.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803211.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803211.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:20304981 |
G |
A |
EMS_canonical_SNV | stop_gained | 77 | A11,A14,A20,A25,A3,B100,B108,B110,B113,B115,B119,B123,B127,B13,B130,B134,B136,B137,B139,B15,B17,B25,B26,B3,B31,B32,B35,B36,B42,B46,B49,B53,B56,B62,B65,B7,B72,B73,B74,B75,B76,B78,B93,B95,B97,B98,B99,C1,C10,C21,C23,C25,C26,C29,C35,C36,C43,C46,C47,C49,C53,C58,C63,C64,C66,C72,C73,C77,C80,C81,C82,C86,D1,D10,D11,D3,D8 |
Chr3:20304982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B7 |
Chr3:20304989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B7 |
Chr3:20305002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C8 |
Chr3:20305025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B69 |
Chr3:20305027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B69 |
Chr3:20305336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B32,C80 |
Chr3:20305339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,B32,C80 |
Chr3:20305404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:20305425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr3:20305439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,C21 |
Chr3:20305441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。