Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001613`

染色体: Chr03 坐标: 20525017-20526193 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001613`
名称	SmilChr03G001613
描述	uncharacterized SmilChr03G001613
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	20525017 - 20526193 / `+`

ID 对照

NCBI Gene ID	`LOC131018515`
GeneID	`131018515`
locus_tag	`-`
NCBI Name	`LOC131018515`
原始查询	`SmilChr03G001613`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=medium
产物	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G66235` (AT1G66235) no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=35; qcov=0.9; evalue=1.14e-52; confidence=medium
Rice	`Os06g0635500` - identity=25.4; qcov=0.788; evalue=3.09e-14; confidence=low
GO	-
KEGG	-
Pfam	PF14303 (NAM-associated)
InterPro	-
eggNOG	-
NR	GeneID:131018515

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803215.1`
2	Chromosome	染色体	0.00000	`XP_057803215.1`
3	Centromere	着丝粒	0.00000	`XP_057803215.1`
4	Chromatin	染色质	0.00000	`XP_057803215.1`
5	Telomere	端粒	0.00000	`XP_057803215.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:20525030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B92,B94
`Chr3:20525045`	`CAA`	`C`	2bp_deletion	frameshift_variant	8	B128,B129,B85,B97,C1,C12,C17,C58
`Chr3:20525049`	`T`	`TCC`	2bp_insertion	frameshift_variant	8	B128,B129,B85,B97,C1,C12,C17,C58
`Chr3:20525065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B58
`Chr3:20525116`	`C`	`CA`	1bp_insertion	frameshift_variant	23	A19,A23,B108,B109,B12,B120,B131,B22,B37,B4,B40,B44,B52,B57,B68,B99,C25,C40,C49,C52,C65,C75,D2
`Chr3:20525125`	`GA`	`G`	1bp_deletion	frameshift_variant	15	A13,B115,B138,B42,B43,B59,B61,B74,B9,C11,C13,C57,C69,C8,D7
`Chr3:20525171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C21,C84
`Chr3:20525191`	`C`	`T`	EMS_canonical_SNV	stop_gained	24	A19,A23,B106,B108,B109,B12,B120,B123,B131,B14,B34,B37,B4,B40,B52,B58,B99,C40,C49,C50,C65,C75,D2,D6
`Chr3:20525204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B44,B91,C78
`Chr3:20525232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr3:20525255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr3:20525290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B54,B64,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803215.1

330 aa

165

330

NAM-associated

PF14303 NAM-associated 114-282 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803215.1`	Pfam	`PF14303`	NAM-associated	Family	114	282	5.4e-17	63.8	No apical meristem-associated C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947232.1
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACAGGAATACACCAAAGAAAAGAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGGTTATTTTGAGTTCGGTTTCAAAACTCAAAGGGTGTATACAACAAGTGGAATA...

CDS

1 records

下载 CDS FASTA

LOC131018515
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACAGGAATACACCAAAGAAAAGAAAATTTTTGGGATCGTGTTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCAGGTTATTTTGAGTTCGGTTTCAAAACTCAAAGGGTGTATACAACAAGTGGAATA...

Protein

1 records

下载 Protein FASTA

XP_057803215.1
MASSRQPNYTIDEDKHLCRVYLEISQDSETGIHQRKENFWDRVREVYNEEKPNPNMYTRSSRSLETRMQVILSSVSKLKGCIQQVEYLNPSGCSENDIFTRAKELMMLDTKYKKGFKFEHVWSIMKDYQKFDCPSQNSRQQMSASQSDSLPQSPISPDGLSNFSINLSDGSGSGSGSSHRPDGVKKTKNKRKKCEDMSNFLKVIEQGNKRIGDLMENSSTTKEQILQLQMQKIEAKNKATEAKKQAIAFQMWESDNKILM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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