Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001630`

染色体: Chr03 坐标: 20995491-20997500 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001630`
名称	SmilChr03G001630
描述	uncharacterized SmilChr03G001630
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	20995491 - 20997500 / `-`

ID 对照

NCBI Gene ID	`LOC131018078`
GeneID	`131018078`
locus_tag	`-`
NCBI Name	`LOC131018078`
原始查询	`SmilChr03G001630`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-AMP-activated protein kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839596]; symbol=AT1G27070; hit=AT1G27070; species=arabidopsis; confidence=weak
产物	5'-AMP-activated protein kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839596]; symbol=AT1G27070; hit=AT1G27070; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G27070` (AT1G27070) 5'-AMP-activated protein kinase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839596] identity=63.6; qcov=0.271; evalue=2.1e-20; confidence=weak
Rice	`Os03g0686900` (FLO6) - identity=64.3; qcov=0.276; evalue=2.87e-20; confidence=weak
GO	-
KEGG	-
Pfam	PF16561 (AMPK1_CBM)
InterPro	-
eggNOG	-
NR	GeneID:131018078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057802790.1`
2	Nucleus	细胞核	0.40000	`XP_057802791.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802790.1`
4	Chromosome	染色体	0.00000	`XP_057802790.1`
5	Centromere	着丝粒	0.00000	`XP_057802790.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:20995738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr3:20995751`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C43
`Chr3:20995751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:20995756`	`CA`	`C`	1bp_deletion	frameshift_variant	6	A9,B111,B51,B83,C78,C82
`Chr3:20995769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr3:20995781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B107,B122,B73,C43,C86
`Chr3:20995788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr3:20995796`	`AAC`	`A`	2bp_deletion	frameshift_variant	1	B107
`Chr3:20995796`	`AAC`	`A`	2bp_deletion	CDS_variant	1	B107
`Chr3:20995801`	`AT`	`A`	1bp_deletion	frameshift_variant	11	A9,B111,B117,B13,B130,B51,B71,C46,C61,C78,C82
`Chr3:20995813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C62,D7
`Chr3:20995828`	`A`	`AC`	1bp_insertion	frameshift_variant	2	B130,B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802790.1

221 aa

110

221

AMPK1_CBM

PF16561 AMPK1_CBM 67-116 aa

XP_057802791.1

203 aa

102

203

AMPK1_CBM

PF16561 AMPK1_CBM 49-98 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802790.1`	Pfam	`PF16561`	AMPK1_CBM	Family	67	116	2.4e-10	41.2	Glycogen recognition site of AMP-activated protein kinase
`XP_057802791.1`	Pfam	`PF16561`	AMPK1_CBM	Family	49	98	2.1e-10	41.4	Glycogen recognition site of AMP-activated protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009100014.1
CTTTGTTTCATTTCAGACGAATTTTTTCCCTATCTAAAGTTTTTAGAATTTTTACTGTCAATATTTTTCCCGCTTTTTCGTCTTCACTCCCAGCGATTCCAGTTGAAGGTGTTGCGATTGTAGTTGGTTGTTTTTGGTTTTGCGATTTTCGTCCTCGGGTCCGGCGTTAGTTTATGTGTTGTTCGGCATTTTGAAGGGTAGGATTTGGAAGTTCTTTCGTCTCCTGCCGTTGCCTCCGGCGACTGTGTCCGTGGGTACGG...

XM_057946808.1
CTTTGTTTCATTTCAGACGAATTTTTTCCCTATCTAAAGTTTTTAGAATTTTTACTGTCAATATTTTTCCCGCTTTTTCGTCTTCACTCCCAGCGATTCCAGTTGAAGGTGTTGCGATTGTAGTTGGTTGTTTTTGGTTTTGCGATTTTCGTCCTCGGGTCCGGCGTTAGTTTATGTGTTGTTCGGCATTTTGAAGGGTAGGATTTGGAAGTTCTTTCGTCTCCTGCCGTTGCCTCCGGCGACTGTGTCCGTGGGTACGG...

CDS

2 records

下载 CDS FASTA

LOC131018078
ATGTACGGAACTTTCAGAGCTGCAGAGATTTCTTTGAAAAAAACTCATGTTGATACTAATAAAGAGAGCTATCATGATGGAATAACTGTAACCACTAAGGAATATGCTGAAGATTTGAACAAAGAGATCATCAATTACAATGAAAGAAGGATGAGAAGATCAAAGTCTGGCGTGTTTTCGATAACCTTGAAGCTGTATCCGGGCAAATACGAGATCAAATTCATAGTTAATGGACAATGGAAACTCGATCCTCTGCGCCC...

LOC131018078
ATGGAAACCTCTCAACAAAATTCAACTAAAAAGAATAGACTAGCAGGGTGGTTCTCACTTGCCAAGTTTGAAGCTGCAGAGATTTCTTTGAAAAAAACTCATGTTGATACTAATAAAGAGAGCTATCATGATGGAATAACTGTAACCACTAAGGAATATGCTGAAGATTTGAACAAAGAGATCATCAATTACAATGAAAGAAGGATGAGAAGATCAAAGTCTGGCGTGTTTTCGATAACCTTGAAGCTGTATCCGGGCAA...

Protein

2 records

下载 Protein FASTA

XP_057802790.1
METSQQNSTKKNRLAGWFSLAKFEAAEISLKKTHVDTNKESYHDGITVTTKEYAEDLNKEIINYNERRMRRSKSGVFSITLKLYPGKYEIKFIVNGQWKLDPLRPTVNNNGHQNNLFIFTYFDELMCVCLSTHDSLLLLILIFEYVFCSTLSSFRADSWRLLNYTPSVPKISSSLGMARVLRKIVKCIDSGKKICYTPSVPIKVATFFWARRLRRGLLCFN

XP_057802791.1
MYGTFRAAEISLKKTHVDTNKESYHDGITVTTKEYAEDLNKEIINYNERRMRRSKSGVFSITLKLYPGKYEIKFIVNGQWKLDPLRPTVNNNGHQNNLFIFTYFDELMCVCLSTHDSLLLLILIFEYVFCSTLSSFRADSWRLLNYTPSVPKISSSLGMARVLRKIVKCIDSGKKICYTPSVPIKVATFFWARRLRRGLLCFN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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