当前解析结果
SmilChr03G001666| 统一新 Gene ID | SmilChr03G001666 |
|---|---|
| 名称 | SmilChr03G001666 |
| 描述 | uncharacterized SmilChr03G001666 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 21673326 - 21675212 / - |
| NCBI Gene ID | LOC131019189 |
|---|---|
| GeneID | 131019189 |
| locus_tag | - |
| NCBI Name | LOC131019189 |
| 原始查询 | SmilChr03G001666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0587600; species=rice; confidence=weak |
| 产物 | hit=Os03g0587600; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0587600- identity=46.8; qcov=0.159; evalue=2.29e-06; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803849.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057803849.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803849.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803849.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803849.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:21673468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B62,B73,B86,C18 |
Chr3:21673501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B99,C25,C53 |
Chr3:21673506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B115,B119,C38 |
Chr3:21673526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:21673592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr3:21673601 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B84 |
Chr3:21673601 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | B84 |
Chr3:21673605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,C40,C86 |
Chr3:21673609 |
TTG |
T |
2bp_deletion | frameshift_variant | 1 | B84 |
Chr3:21673609 |
TTG |
T |
2bp_deletion | CDS_variant | 1 | B84 |
Chr3:21673611 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B39,B61,C36 |
Chr3:21673611 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B39,B61,C36 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。