Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001672`

染色体: Chr03 坐标: 21794417-21802491 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001672`
名称	SmilChr03G001672
描述	golgin candidate 6-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	21794417 - 21802491 / `-`

ID 对照

NCBI Gene ID	`LOC131015609`
GeneID	`131015609`
locus_tag	`-`
NCBI Name	`LOC131015609`
原始查询	`SmilChr03G001672`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	golgin candidate 6-like
产物	golgin candidate 6-like
Arabidopsis	`AT3G27530` (GC6) golgin Putative 6 [Source:NCBI gene (formerly Entrezgene);Acc:822375] identity=66.7; qcov=0.989; evalue=0; confidence=high
Rice	`Os12g0538900` - identity=62.4; qcov=0.98; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0005737 (cytoplasm); GO:0005783 (endoplasmic reticulum); GO:0005795 (Golgi stack); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0012507 (ER to Golgi transport vesicle membrane); GO:0045056 (transcytosis); GO:0048211 (GO:0048211); GO:0048280 (vesicle fusion with Golgi apparatus)
KEGG	-
Pfam	PF04869 (Uso1_p115_head); PF04871 (Uso1_p115_C)
InterPro	-
eggNOG	-
NR	GeneID:131015609

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057800033.1`
2	Cytoplasm	细胞质	0.60000	`XP_057800033.1`
3	Cytosol	细胞质基质	0.60000	`XP_057800033.1`
4	Trans-golgi network	Trans-golgi network	0.60000	`XP_057800033.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057800033.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:21794750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:21794811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:21794814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B47,B78,C61
`Chr3:21794995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:21795037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr3:21795092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:21796187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,C72
`Chr3:21796424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B82,B90,C16,C30,D10
`Chr3:21796718`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B127
`Chr3:21796718`	`TC`	`T`	1bp_deletion	CDS_variant	1	B127
`Chr3:21798933`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B91
`Chr3:21798933`	`TA`	`T`	1bp_deletion	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800033.1

914 aa

457

914

Uso1_p115_head

Uso1_p115_C

PF04869 Uso1_p115_head 374-625 aa PF04871 Uso1_p115_C 789-912 aa

XP_057800034.1

914 aa

457

914

Uso1_p115_head

Uso1_p115_C

PF04869 Uso1_p115_head 374-625 aa PF04871 Uso1_p115_C 789-912 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800033.1`	Pfam	`PF04869`	Uso1_p115_head	Repeat	374	625	2.5e-26	93.2	Uso1 / p115 like vesicle tethering protein, head region
`XP_057800033.1`	Pfam	`PF04871`	Uso1_p115_C	Family	789	912	2.8e-28	99.3	Uso1 / p115 like vesicle tethering protein, C terminal region
`XP_057800034.1`	Pfam	`PF04869`	Uso1_p115_head	Repeat	374	625	2.5e-26	93.2	Uso1 / p115 like vesicle tethering protein, head region
`XP_057800034.1`	Pfam	`PF04871`	Uso1_p115_C	Family	789	912	2.8e-28	99.3	Uso1 / p115 like vesicle tethering protein, C terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944050.1
TCTCTCTCCCTTTCTCTGTCTGTCCTCGGCTCGATCCCTTTCATAGGTCACATGTAACAGGTTTGGCTGTTTCGGCGGTGCAGAATGGATTTTGTATCTAAATACCAGGATGTTGTCGGGCGTGTTTTTAGAAGCGAAAATTCGAGCTCCGGTGAAGATAGTTATGTTGAGCGCTTGCTGGATCGCATTGGCAACGGTGTCCTGGCTGAGGACAGGAGGAATGCCATGGCTGAGCTTCAGGCAGTCGTAGCTGAAAGTCA...

XM_057944051.1
TCCCTTTCATAGGTCACATAGGTTTGGCTGTTTCGGCGGTGCAGAATGGATTTTGTATCTAAATACCAGGATGTTGTCGGGCGTGTTTTTAGAAGCGAAAATTCGAGCTCCGGTGAAGATAGTTATGTTGAGCGCTTGCTGGATCGCATTGGCAACGGTGTCCTGGCTGAGGACAGGAGGAATGCCATGGCTGAGCTTCAGGCAGTCGTAGCTGAAAGTCATGATGCACAGTTAGCCTTTGGAGCAATGGGCTTTCCCAC...

CDS

2 records

下载 CDS FASTA

LOC131015609
ATGGATTTTGTATCTAAATACCAGGATGTTGTCGGGCGTGTTTTTAGAAGCGAAAATTCGAGCTCCGGTGAAGATAGTTATGTTGAGCGCTTGCTGGATCGCATTGGCAACGGTGTCCTGGCTGAGGACAGGAGGAATGCCATGGCTGAGCTTCAGGCAGTCGTAGCTGAAAGTCATGATGCACAGTTAGCCTTTGGAGCAATGGGCTTTCCCACACTACTGAATGTCTTAAAGGAGGGGCGTGACGACGTAGAAATGGT...

Protein

2 records

下载 Protein FASTA

XP_057800033.1
MDFVSKYQDVVGRVFRSENSSSGEDSYVERLLDRIGNGVLAEDRRNAMAELQAVVAESHDAQLAFGAMGFPTLLNVLKEGRDDVEMVRGALETLVSALSPIEFGKKSKNEVQPALMNSDLLSREVENISLLLSLLLEEDFYIRYYTLQLLTALLTNSPNWLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTYLTREAEEIQKIVVFEGALEKIFGIIKEEGGSEGGVVVQDCLELLNNLLRFNSSNQVLLRETVGFD...

XP_057800034.1
MDFVSKYQDVVGRVFRSENSSSGEDSYVERLLDRIGNGVLAEDRRNAMAELQAVVAESHDAQLAFGAMGFPTLLNVLKEGRDDVEMVRGALETLVSALSPIEFGKKSKNEVQPALMNSDLLSREVENISLLLSLLLEEDFYIRYYTLQLLTALLTNSPNWLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTYLTREAEEIQKIVVFEGALEKIFGIIKEEGGSEGGVVVQDCLELLNNLLRFNSSNQVLLRETVGFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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