Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001673`

染色体: Chr03 坐标: 21877229-21878695 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001673`
名称	SmilChr03G001673
描述	uncharacterized SmilChr03G001673
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	21877229 - 21878695 / `-`

ID 对照

NCBI Gene ID	`LOC131018527`
GeneID	`131018527`
locus_tag	`-`
NCBI Name	`LOC131018527`
原始查询	`SmilChr03G001673`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=50.4; qcov=0.967; evalue=1.33e-161; confidence=high
Rice	`Os02g0301400` - identity=37.5; qcov=0.836; evalue=9.1e-97; confidence=medium
GO	-
KEGG	-
Pfam	PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:131018527

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057803229.1`
2	Nucleus	细胞核	0.40000	`XP_057803229.1`
3	Cytosol	细胞质基质	0.20000	`XP_057803229.1`
4	Chromosome	染色体	0.00000	`XP_057803229.1`
5	Centromere	着丝粒	0.00000	`XP_057803229.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:21877232`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:21877432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:21877468`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C24,C3
`Chr3:21877468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,C3
`Chr3:21877657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C3
`Chr3:21877909`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B23,B88,C6
`Chr3:21877909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B88,C6
`Chr3:21877968`	`A`	`ATG`	2bp_insertion	frameshift_variant	2	A4,C34
`Chr3:21877968`	`A`	`ATG`	2bp_insertion	CDS_variant	2	A4,C34
`Chr3:21877991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,C46,D11
`Chr3:21878000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr3:21878040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803229.1

488 aa

244

488

DUF4371

FAM200-ZBED5_RNase-like

PF14291 DUF4371 4-242 aa PF27073 FAM200-ZBED5_RNase-like 157-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803229.1`	Pfam	`PF14291`	DUF4371	Domain	4	242	2.2e-97	326.0	ZMYM1/FAM200, RNase-like domain
`XP_057803229.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	157	248	7.1e-09	36.3	FAM200/ZBED5 RNase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947246.1
ATGGGGGGAGATGCATTTGTCAATGGAGGGTTTAAGTCTTGGAATAAATTACCGGATAGGTTCGCGAAACATGTTGGTGGAGTTAAAAGTATTCACAATCTTGCTTATGAGAAATATGTGAATTTAAGAGATGGCAAAAGGAAATCAATTCTTGTTTCTTTTGATAATGCCAATGACTTGACTCAAAGAGAGTATGAAATTCGCTTGAAAGCTTCAATTTCTTGTGTGCGTTATCTATTGCGACAAGGCTTGGCATTTCG...

CDS

1 records

下载 CDS FASTA

LOC131018527
ATGGGGGGAGATGCATTTGTCAATGGAGGGTTTAAGTCTTGGAATAAATTACCGGATAGGTTCGCGAAACATGTTGGTGGAGTTAAAAGTATTCACAATCTTGCTTATGAGAAATATGTGAATTTAAGAGATGGCAAAAGGAAATCAATTCTTGTTTCTTTTGATAATGCCAATGACTTGACTCAAAGAGAGTATGAAATTCGCTTGAAAGCTTCAATTTCTTGTGTGCGTTATCTATTGCGACAAGGCTTGGCATTTCG...

Protein

1 records

下载 Protein FASTA

XP_057803229.1
MGGDAFVNGGFKSWNKLPDRFAKHVGGVKSIHNLAYEKYVNLRDGKRKSILVSFDNANDLTQREYEIRLKASISCVRYLLRQGLAFRGHRESEESLNRGNFIELLKWLKAHNESISKVTLENAPGNCQLIAPMIQKDIINCCAKETTMRILEELGDDYFAILADESSDVSQKEQLALCLRYIEGKTGKIVERFIGLVHVGDTTTLSLRSAIMSLLVEHSLSPSKIQGQGYDGASNMKGEINGLKTLIMQDTPSAYYVHCF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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