Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001681`

染色体: Chr03 坐标: 22161963-22169280 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001681`
名称	SmilChr03G001681
描述	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	22161963 - 22169280 / `+`

ID 对照

NCBI Gene ID	`LOC131015616`
GeneID	`131015616`
locus_tag	`-`
NCBI Name	`LOC131015616`
原始查询	`SmilChr03G001681`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
产物	probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase%2C mitochondrial
Arabidopsis	`AT4G29540` (LpxA) bacterial transferase hexapeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829075] identity=76; qcov=0.862; evalue=1.42e-166; confidence=high
Rice	`Os01g0722100` - identity=68.4; qcov=0.871; evalue=4.75e-152; confidence=high
GO	GO:0008610 (lipid biosynthetic process); GO:0008780 (acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity)
KEGG	smil00540 (Lipopolysaccharide biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00132 (Hexapep); PF13720 (Acetyltransf_11)
InterPro	-
eggNOG	-
NR	GeneID:131015616

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057800040.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057800041.1`
3	Nucleus	细胞核	0.00000	`XP_057800040.1`
4	Chromosome	染色体	0.00000	`XP_057800040.1`
5	Centromere	着丝粒	0.00000	`XP_057800040.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:22163353`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B58
`Chr3:22163353`	`AC`	`A`	1bp_deletion	CDS_variant	1	B58
`Chr3:22163553`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	B41
`Chr3:22163553`	`A`	`AAT`	2bp_insertion	CDS_variant	1	B41
`Chr3:22163554`	`GGT`	`G`	2bp_deletion	frameshift_variant	1	B41
`Chr3:22163554`	`GGT`	`G`	2bp_deletion	CDS_variant	1	B41
`Chr3:22163583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:22165472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:22165476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:22166231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr3:22166445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B126,B33,C16
`Chr3:22167446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800040.1

336 aa

168

336

Hexapep

Acetyltransf_11

PF00132 Hexapep 76-109 aa PF00132 Hexapep 171-204 aa PF13720 Acetyltransf_11 242-333 aa

XP_057800041.1

334 aa

167

334

Hexapep

Acetyltransf_11

PF00132 Hexapep 76-109 aa PF00132 Hexapep 171-204 aa PF13720 Acetyltransf_11 242-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800040.1`	Pfam	`PF00132`	Hexapep	Repeat	76	109	1.4e-30	104.4	Bacterial transferase hexapeptide (six repeats)
`XP_057800040.1`	Pfam	`PF00132`	Hexapep	Repeat	171	204	1.4e-30	104.4	Bacterial transferase hexapeptide (six repeats)
`XP_057800040.1`	Pfam	`PF13720`	Acetyltransf_11	Domain	242	333	1.1e-21	77.8	Udp N-acetylglucosamine O-acyltransferase; Domain 2
`XP_057800041.1`	Pfam	`PF00132`	Hexapep	Repeat	76	109	1.3e-30	104.5	Bacterial transferase hexapeptide (six repeats)
`XP_057800041.1`	Pfam	`PF00132`	Hexapep	Repeat	171	204	1.3e-30	104.5	Bacterial transferase hexapeptide (six repeats)
`XP_057800041.1`	Pfam	`PF13720`	Acetyltransf_11	Domain	242	331	1.2e-22	80.8	Udp N-acetylglucosamine O-acyltransferase; Domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XR_009098598.1
TTTTTTTTTTTTTTTTTTTTTTCACGATCAGTTTTCTTTTGCTCTTTCCGAGGTTTGGGGTTTGGGACTTCCTACGAACAATGGTGCGGTTGGAGTTTCTGAGGTTGTTTCGTCTCCGCCTCCTCTCGAAGTATCTTTCTTGTTTTATCTTTTTTTAGATAGGTACTCTTTTTATTCTCCGTGGTTTTTCTTTTGGGTTTTTCTGTAGAGATTTTAATGAAGTTCCATCCTTAATTCGCGTTTCTGGTTCTTCTGACTAC...

XR_009098597.1
TTTTTTTTTTTTTTTTCACGATCAGTTTTCTTTTGCTCTTTCCGAGGTTTGGGGTTTGGGACTTCCTACGAACAATGGTGCGGTTGGAGTTTCTGAGGTTGTTTCGTCTCCGCCTCCTCTCGAAGTATCTTTCTTGTTTTATCTTTTTTTAGATAGGTTTCTGGTTCTTCTGACTACCGTCCATCTACCGCTCTTTCTGTCTGTGCCGTCCGCTGGTCGCCGCCGCTATCGGCCCCGCCTCGAATCTCTCCGTCCAAGCG...

CDS

2 records

下载 CDS FASTA

LOC131015616
ATGGCTTTGCTTCTCGGAATTCGAAGGCCATTCTCTGTTGCAGTTCAACGGCTCCACCTCCAATGCTTCTCCACTTCGCTTCCCTATGTTAAGGAGGAGCAGAAAATGAGTTCTATGGAAACAGGTGGCAAGTCAAGTTTTATTCATCCATCCGCCGTTGTTCATCCAGATGCCATATTAGGTCAGGGTGTTTCTGTTGGTCCTTTTTGCACAGTTGGATCTTCTGCAAAGTTAGGGAACGGTTGTCAGTTATACCCAGG...

Protein

2 records

下载 Protein FASTA

XP_057800040.1
MALLLGIRRPFSVAVQRLHLQCFSTSLPYVKEEQKMSSMETGGKSSFIHPSAVVHPDAILGQGVSVGPFCTVGSSAKLGNGCQLYPGSHVCGHTKIGDDCTLMMGAVVGDDLPGSTVIGNNNLIGHHAVVGIKCQDLKYKPGNECFLEIGDNNEIREYVSIHRSSRPDERTIIGANNLIMGSCHIAHDCKMGNHNIFANNTLLAGHVNVENYTHTAGATVVHQFCHIGSFSFIGGGSVVSQDVPKYTMVSGERAELRGLN...

XP_057800041.1
MALLLGIRRPFSVAVQRLHLQCFSTSLPYVKEEQKMSSMETGGKSSFIHPSAVVHPDAILGQGVSVGPFCTVGSSAKLGNGCQLYPGSHVCGHTKIGDDCTLMMGAVVGDDLPGSTVIGNNNLIGHHAVVGIKCQDLKYKPGNECFLEIGDNNEIREYVSIHRSSRPDERTIIGANNLIMGSCHIAHDCKMGNHNIFANNTLLAGHVNVENYTHTAGATVVHQFCHIGSFSFIGGGSVVSQDVPKYTMVSGERAELRGLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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