Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001739`

染色体: Chr03 坐标: 23483123-23487206 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001739`
名称	SmilChr03G001739
描述	uncharacterized SmilChr03G001739
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	23483123 - 23487206 / `+`

ID 对照

NCBI Gene ID	`LOC131015660`
GeneID	`131015660`
locus_tag	`-`
NCBI Name	`LOC131015660`
原始查询	`SmilChr03G001739`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443]; symbol=AT4G23440; hit=AT4G23440; species=arabidopsis; confidence=high
产物	Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443]; symbol=AT4G23440; hit=AT4G23440; species=arabidopsis; confidence=high
Arabidopsis	`AT4G23440` (AT4G23440) Disease resistance protein (TIR-NBS class) [Source:NCBI gene (formerly Entrezgene);Acc:828443] identity=62.9; qcov=0.993; evalue=0; confidence=high
Rice	`Os01g0760400` (P0460E08.19) - identity=57.2; qcov=1; evalue=0; confidence=high
GO	GO:0000725 (recombinational repair); GO:0007165 (signal transduction); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding)
KEGG	-
Pfam	PF13676 (TIR_2); PF25895 (WHD_plant_disease)
InterPro	-
eggNOG	-
NR	GeneID:131015660

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057800066.1`
2	Nucleus	细胞核	0.20000	`XP_057800066.1`
3	Cytosol	细胞质基质	0.20000	`XP_057800066.1`
4	Chromosome	染色体	0.00000	`XP_057800066.1`
5	Centromere	着丝粒	0.00000	`XP_057800066.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:23484245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C16
`Chr3:23484535`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C81
`Chr3:23484535`	`TC`	`T`	1bp_deletion	CDS_variant	1	C81
`Chr3:23484537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr3:23484725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C2
`Chr3:23484846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,C13,C25,C5
`Chr3:23485302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:23485556`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C20
`Chr3:23485556`	`TC`	`T`	1bp_deletion	CDS_variant	1	C20
`Chr3:23485701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:23485969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr3:23486001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800066.1

1003 aa

502

1003

TIR_2

WHD_plant_disease

PF13676 TIR_2 180-257 aa PF25895 WHD_plant_disease 707-817 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800066.1`	Pfam	`PF13676`	TIR_2	Domain	180	257	2.7e-07	31.8	TIR domain
`XP_057800066.1`	Pfam	`PF25895`	WHD_plant_disease	Domain	707	817	3.1e-43	147.2	Winged Helix Domain in plant disease resistance proteins

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944083.1
CTGAGGCCTACTAAATTTTATAGTATATTCAAGTCTGAACGCTTTCCGATTTTCTGCTGAAAAAGGTAAAATCCATTTTTCCAATTCTCTTCCGCCATTTAAAATCTTTTCATTGCTCCACTTTTTTCAAGAACAACAACTGGGGCCTCTCCTCCTCTGTCGAATACTGCTCAAAATACCTTCAATTTCTCTCTTGCTCTGACATACACTCCTTTCTCATACTCCCCCAATCTTTGCACTAATCGTCTTCGCTCTTCGAT...

CDS

1 records

下载 CDS FASTA

LOC131015660
ATGGGATTTCAGCCTACAAGGAATTGGGTGAAATCAGAGATGGAAGACATTTCTAGATTGGGGCCATTACCTAATACAACATCTAGGAATCTCTCATCATCTTCATCGGCATTTTTCTCTGCAAACCAGTCCCCCTTCTTCTCCCCGAGATCATCAACCTGTCGTAAATCCGCGCATTCTGATGAATTGTGCCCCTCCGCCACCACAACCGCAGATAATGGGGATACAAGTTTGCATAACACCGAATCAGAACTCCTCAT...

Protein

1 records

下载 Protein FASTA

XP_057800066.1
MGFQPTRNWVKSEMEDISRLGPLPNTTSRNLSSSSSAFFSANQSPFFSPRSSTCRKSAHSDELCPSATTTADNGDTSLHNTESELLMSIRLASADVAEACTSSDPLKLGAVSSSTGVSKSPFSSNEALHQNDCSKQKGKGKRVERLLEIKVPPTSYTSNRLRSCDVYVGFYGRKPLLLRFANWLRAELEVQGLSCFLTDRSRCRNSRKHNIVEKAMDACTYGVVILTKKSFRNPYTIEELRFFSSKKNLVPIYFDLGPDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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