Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001741`

染色体: Chr03 坐标: 23500106-23507967 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001741`
名称	SmilChr03G001741
描述	mitogen-activated protein kinase kinase kinase YODA-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	23500106 - 23507967 / `-`

ID 对照

NCBI Gene ID	`LOC131015661`
GeneID	`131015661`
locus_tag	`-`
NCBI Name	`LOC131015661`
原始查询	`SmilChr03G001741`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitogen-activated protein kinase kinase kinase YODA-like
产物	mitogen-activated protein kinase kinase kinase YODA-like
Arabidopsis	`AT1G63700` (YDA) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842674] identity=57; qcov=1.03; evalue=0; confidence=high
Rice	`Os02g0666300` (YDA2) - identity=56.7; qcov=0.889; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131015661

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800068.1`
2	Cytoplasm	细胞质	0.80000	`XP_057800068.1`
3	Cytosol	细胞质基质	0.80000	`XP_057800068.1`
4	Nucleus	细胞核	0.00000	`XP_057800068.1`
5	Chromosome	染色体	0.00000	`XP_057800068.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:23500779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,C13,C25,C5
`Chr3:23501703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C86
`Chr3:23503270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:23503342`	`AT`	`A`	1bp_deletion	frameshift_variant	252	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C26,C27,C28,C29,C3,C30,C31,C32,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
`Chr3:23504035`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B38,B39,C13
`Chr3:23504035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C13
`Chr3:23504108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B81,D2
`Chr3:23504482`	`T`	`TAG`	2bp_insertion	frameshift_variant	72	A10,A2,A22,A7,A8,A9,B100,B106,B107,B111,B112,B124,B125,B126,B13,B131,B133,B136,B20,B22,B24,B28,B30,B32,B37,B42,B48,B49,B5,B50,B55,B56,B57,B59,B60,B68,B7,B78,B79,B8,B84,B91,B99,C10,C12,C18,C24,C25,C31,C36,C37,C38,C4,C44,C45,C48,C55,C59,C60,C61,C63,C66,C71,C78,C81,C83,C9,D1,D11,D2,D5,D9
`Chr3:23504561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr3:23504724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr3:23504807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:23504985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800068.1

884 aa

442

884

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 398-653 aa PF07714 PK_Tyr_Ser-Thr 400-648 aa

XP_057800069.1

884 aa

442

884

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 398-653 aa PF07714 PK_Tyr_Ser-Thr 400-648 aa

XP_057800070.1

884 aa

442

884

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 398-653 aa PF07714 PK_Tyr_Ser-Thr 400-648 aa

XP_057800071.1

884 aa

442

884

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 398-653 aa PF07714 PK_Tyr_Ser-Thr 400-648 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800068.1`	Pfam	`PF00069`	Pkinase	Domain	398	653	4.5e-72	243.3	Protein kinase domain
`XP_057800068.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	400	648	1.4e-47	162.9	Protein tyrosine and serine/threonine kinase
`XP_057800069.1`	Pfam	`PF00069`	Pkinase	Domain	398	653	4.5e-72	243.3	Protein kinase domain
`XP_057800069.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	400	648	1.4e-47	162.9	Protein tyrosine and serine/threonine kinase
`XP_057800070.1`	Pfam	`PF00069`	Pkinase	Domain	398	653	4.5e-72	243.3	Protein kinase domain
`XP_057800070.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	400	648	1.4e-47	162.9	Protein tyrosine and serine/threonine kinase
`XP_057800071.1`	Pfam	`PF00069`	Pkinase	Domain	398	653	4.5e-72	243.3	Protein kinase domain
`XP_057800071.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	400	648	1.4e-47	162.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057944086.1
GGCATACACATACCTATATATTAATAAAGACCGTACACTCTTTCTCTCTCTAAAAAATATCTCTCTCTTTGTCTCTCTCTGCAACTCTAAAAGTGATGCTGATTATGTGAGCACGGATAAAATATTCGGTCCGGTTCGTGCTGCCCCTCCCTCCGGTCTGTAGCAGTACTTACCAACTATGCATTGCATATCTATTTGATATATAAAGCAGCCTTTTCTGCACCAAGTTTATTCAATCCAAGGATCGCAACTGACAGTTC...

XM_057944087.1
ATACACATACCTATATATTAATAAAGACCGTACACTCTTTCTCTCTCTAAAAAATATCTCTCTCTTTGTCTCTCTCTGCAACTCTAAAAGTGATGCTGATTATGTGAGCACGGATAAAATATTCGGTCCGGTTCGTGCTGCCCCTCCCTCCGGGTTCGCGTTTCTAGTGTTGCTCGCTTTGCATTTTTGTATTGCAAAATTTTGAGACGTTTCGGCGCTTTGTCTTTGAGTTCACAGTCCGTTTTCAGGTCTGTAGCAGT...

CDS

4 records

下载 CDS FASTA

LOC131015661
ATGCCTTCATGGTGGCCAAAATCTTCCAAAGATGTGAAGAAGAAATCAAATGTAGAAAGTTTCATTGGTTCATGGCACAGGAAATGCATTAGACCTGGAGCTCCTCGTAGACATCGTAGTGATACTACCTCACAGAAGATATCTAGGGCAGATTCACTGTCCCCATCACCATCCAAACAAGTATCACGTTGTCAGAGTTTTGGTGAGAGGCCCCAGGCCCAACCACTTCCCCTTCCAGGTAGCCATTTTACTAATAGTTA...

Protein

4 records

下载 Protein FASTA

XP_057800068.1
MPSWWPKSSKDVKKKSNVESFIGSWHRKCIRPGAPRRHRSDTTSQKISRADSLSPSPSKQVSRCQSFGERPQAQPLPLPGSHFTNSYHADSGDRASKGPSVDRGSKTAVFHPLPKPGHGKIGKRAEVGERDLATASSSSDSSSDTDDPSDSRLLSPQASDYENGIKSDAASPSGLKQRDQFPFAKKKSSKEMSPAADILLHCRTSPESPNQRPVDAKVARIKVPHLSVPNSSMSSPSRSPMRGFCHEPIMNGGFWLGKPY...

XP_057800069.1
MPSWWPKSSKDVKKKSNVESFIGSWHRKCIRPGAPRRHRSDTTSQKISRADSLSPSPSKQVSRCQSFGERPQAQPLPLPGSHFTNSYHADSGDRASKGPSVDRGSKTAVFHPLPKPGHGKIGKRAEVGERDLATASSSSDSSSDTDDPSDSRLLSPQASDYENGIKSDAASPSGLKQRDQFPFAKKKSSKEMSPAADILLHCRTSPESPNQRPVDAKVARIKVPHLSVPNSSMSSPSRSPMRGFCHEPIMNGGFWLGKPY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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