当前解析结果
SmilChr03G001751| 统一新 Gene ID | SmilChr03G001751 |
|---|---|
| 名称 | SmilChr03G001751 |
| 描述 | zinc finger AN1 domain-containing stress-associated protein 12-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 23741102 - 23741413 / + |
| NCBI Gene ID | LOC131018547 |
|---|---|
| GeneID | 131018547 |
| locus_tag | - |
| NCBI Name | LOC131018547 |
| 原始查询 | SmilChr03G001751 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger AN1 domain-containing stress-associated protein 12-like |
| 产物 | zinc finger AN1 domain-containing stress-associated protein 12-like |
| Arabidopsis | AT3G28210 (PMZ)zinc finger (AN1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:822447] identity=61.2; qcov=0.65; evalue=7.82e-25; confidence=medium |
| Rice | Os09g0385700 (OsSAP17)- identity=61.8; qcov=0.534; evalue=2.73e-18; confidence=low |
| GO | GO:0005737 (cytoplasm); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018547 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803245.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057803245.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803245.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803245.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803245.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:23741157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:23741235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B71,B78,D11 |
Chr3:23741260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:23741333 |
C |
CT |
1bp_insertion | frameshift_variant | 21 | A1,A4,B115,B13,B27,B28,B51,B63,B77,B8,B83,B85,B89,B99,C13,C26,C29,C3,C83,C85,C87 |
Chr3:23741349 |
CG |
C |
1bp_deletion | frameshift_variant | 50 | A18,A20,A4,A9,B1,B10,B102,B113,B119,B12,B124,B133,B140,B17,B18,B25,B41,B42,B43,B55,B6,B61,B68,B70,B72,B73,B85,B90,B92,B95,B98,C10,C14,C22,C25,C27,C4,C47,C48,C51,C54,C56,C62,C65,C67,C70,C74,C86,D1,D8 |
Chr3:23741353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B2,B71,B78,D11 |
Chr3:23741397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。