Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001754`

染色体: Chr03 坐标: 23821854-23824307 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001754`
名称	SmilChr03G001754
描述	uncharacterized SmilChr03G001754
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	23821854 - 23824307 / `+`

ID 对照

NCBI Gene ID	`LOC131015673`
GeneID	`131015673`
locus_tag	`-`
NCBI Name	`LOC131015673`
原始查询	`SmilChr03G001754`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842670]; symbol=AT1G63660; hit=AT1G63660; species=arabidopsis; confidence=high
产物	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842670]; symbol=AT1G63660; hit=AT1G63660; species=arabidopsis; confidence=high
Arabidopsis	`AT1G63660` (AT1G63660) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase [Source:NCBI gene (formerly Entrezgene);Acc:842670] identity=75.3; qcov=1; evalue=0; confidence=high
Rice	`Os08g0326600` (OJ1136_A10.112) - identity=74.2; qcov=0.987; evalue=0; confidence=high
GO	GO:0003921 (GMP synthase activity); GO:0003922 (GMP synthase (glutamine-hydrolyzing) activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006177 (GMP biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00117 (GATase); PF00958 (GMP_synt_C); PF02540 (NAD_synthase); PF07722 (Peptidase_C26)
InterPro	-
eggNOG	-
NR	GeneID:131015673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800077.1`
2	Cytosol	细胞质基质	0.80000	`XP_057800077.1`
3	Nucleus	细胞核	0.00000	`XP_057800077.1`
4	Chromosome	染色体	0.00000	`XP_057800077.1`
5	Centromere	着丝粒	0.00000	`XP_057800077.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:23822477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:23823287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:23823363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr3:23824145`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B94
`Chr3:23824145`	`G`	`GA`	1bp_insertion	CDS_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800077.1

534 aa

267

534

GATase

Peptidase_C26

NAD_synthase

GMP_synt_C

PF00117 GATase 12-199 aa PF07722 Peptidase_C26 76-182 aa PF02540 NAD_synthase 229-254 aa PF00958 GMP_synt_C 443-533 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800077.1`	Pfam	`PF00117`	GATase	Domain	12	199	1.3e-38	133.3	Glutamine amidotransferase class-I
`XP_057800077.1`	Pfam	`PF07722`	Peptidase_C26	Domain	76	182	5.6e-09	36.8	Peptidase C26
`XP_057800077.1`	Pfam	`PF02540`	NAD_synthase	Domain	229	254	3.3e-09	36.9	NAD synthase
`XP_057800077.1`	Pfam	`PF00958`	GMP_synt_C	Domain	443	533	6.2e-41	139.1	GMP synthase C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057944094.1
GTTCAAGTATCTACACCTAGGCATTCATTCCCGCCACATATAGAAAACCCTTGAGAAAAACCCTAGCCTCCACTCTCGCTAAACCCCACTCATACACATCCTCTGCAAATTCCCCAAAACCTTCAGCCATCATCAATGGACGCTCAAGCCGTGAAATCAAACCTCGTCCTAATCCTCGACTTCGGCTCCCAGTACACGCATCTCATCACTCGCCGAATCCGCGCCCTCAACGTTTTCTCCCTCTGCATCAACGGCACGTC...

CDS

1 records

下载 CDS FASTA

LOC131015673
ATGGACGCTCAAGCCGTGAAATCAAACCTCGTCCTAATCCTCGACTTCGGCTCCCAGTACACGCATCTCATCACTCGCCGAATCCGCGCCCTCAACGTTTTCTCCCTCTGCATCAACGGCACGTCCTCTTTGAAATCCATCGCCGATTTGAACCCGAGTGCAATCATCCTCTCTGGGGGCCCCCACAGCGTCCATGCGCCTGACGCGCCGTGCTTCGCGCCCGAGTTCATCGAGTACGTGGAGTCAAAAAATGTCGCCGT...

Protein

1 records

下载 Protein FASTA

XP_057800077.1
MDAQAVKSNLVLILDFGSQYTHLITRRIRALNVFSLCINGTSSLKSIADLNPSAIILSGGPHSVHAPDAPCFAPEFIEYVESKNVAVLGICYGLQLIVQQLGGEVKVAGKHEYGRMGIEVEKVEGLFGNKKVGDKQSVWMSHGDEAVRLPEGFEVVARSHQGAVAAIENRARGFYGLQYHPEVTHSPEGMDTLKYFLFDICGISANWKMQDILDEELKVIKSTVGPDDLVICGLSGGVDSTVAATLVHKAIGDRLHCLFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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