当前解析结果
SmilChr03G001784| 统一新 Gene ID | SmilChr03G001784 |
|---|---|
| 名称 | SmilChr03G001784 |
| 描述 | dynamin-related protein 4C-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 24405198 - 24415339 / - |
| NCBI Gene ID | LOC131018563 |
|---|---|
| GeneID | 131018563 |
| locus_tag | - |
| NCBI Name | LOC131018563 |
| 原始查询 | SmilChr03G001784 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dynamin-related protein 4C-like |
| 产物 | dynamin-related protein 4C-like |
| Arabidopsis | AT1G60500 (DRP4C)Dynamin related protein 4C [Source:NCBI gene (formerly Entrezgene);Acc:842345] identity=54.7; qcov=0.727; evalue=2e-126; confidence=high |
| Rice | Os03g0260000- identity=54.9; qcov=0.729; evalue=5.61e-128; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00350 (Dynamin_N); PF01031 (Dynamin_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018563 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057803261.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057803261.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803261.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803261.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803261.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:24405209 |
G |
A |
EMS_canonical_SNV | stop_gained | 116 | A10,A13,A18,A2,A21,A22,A25,A3,A7,A8,B1,B101,B103,B105,B107,B108,B109,B110,B115,B117,B121,B122,B124,B128,B13,B131,B133,B135,B137,B139,B19,B20,B21,B22,B23,B24,B25,B26,B31,B33,B36,B37,B38,B39,B40,B46,B48,B49,B53,B54,B55,B58,B60,B61,B62,B65,B66,B70,B77,B8,B80,B82,B83,B84,B89,B9,B90,B92,B93,B94,B97,C1,C11,C12,C15,C17,C2,C20,C21,C23,C26,C29,C31,C34,C36,C4,C42,C43,C47,C48,C49,C50,C51,C58,C59,C6,C60,C61,C62,C63,C65,C67,C69,C71,C75,C76,C78,C80,C82,D1,D10,D2,D3,D5,D6,D7 |
Chr3:24405239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B108,B123,B46,C23 |
Chr3:24405253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr3:24405256 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A20,B106,B120,B124,B139,B87,C7,C72 |
Chr3:24405538 |
AGT |
A |
2bp_deletion | frameshift_variant | 3 | A22,A3,B42 |
Chr3:24405538 |
AGT |
A |
2bp_deletion | CDS_variant | 3 | A22,A3,B42 |
Chr3:24405543 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B87 |
Chr3:24405543 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B87 |
Chr3:24405563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,B2,C12 |
Chr3:24405829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr3:24405885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B47,B57,B78,C33,C72 |
Chr3:24405886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B129,B132,C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803261.1PF00350
Dynamin_N 207-318 aa
PF01031
Dynamin_M 327-468 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803261.1 |
Pfam | PF00350 |
Dynamin_N | Domain | 207 | 318 | 1.7e-17 | 64.7 | Dynamin family |
XP_057803261.1 |
Pfam | PF01031 |
Dynamin_M | Family | 327 | 468 | 4.6e-27 | 95.7 | Dynamin central region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。