当前解析结果
SmilChr03G001790| 统一新 Gene ID | SmilChr03G001790 |
|---|---|
| 名称 | SmilChr03G001790 |
| 描述 | dynamin-related protein 4C-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 24427282 - 24429690 / + |
| NCBI Gene ID | LOC131015693 |
|---|---|
| GeneID | 131015693 |
| locus_tag | - |
| NCBI Name | LOC131015693 |
| 原始查询 | SmilChr03G001790 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dynamin-related protein 4C-like |
| 产物 | dynamin-related protein 4C-like |
| Arabidopsis | AT1G60500 (DRP4C)Dynamin related protein 4C [Source:NCBI gene (formerly Entrezgene);Acc:842345] identity=60.1; qcov=0.929; evalue=0; confidence=high |
| Rice | Os03g0260000- identity=58; qcov=0.94; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00350 (Dynamin_N); PF01031 (Dynamin_M); PF02212 (GED) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015693 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057800093.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057800093.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057800093.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057800093.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057800093.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:24427477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr3:24427551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B58 |
Chr3:24427566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:24427574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr3:24427622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C32 |
Chr3:24427626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,C32 |
Chr3:24427645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr3:24427646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr3:24428183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:24428315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B33,C82 |
Chr3:24428377 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B6 |
Chr3:24428377 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057800093.1PF00350
Dynamin_N 81-255 aa
PF01031
Dynamin_M 263-547 aa
PF02212
GED 588-676 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057800093.1 |
Pfam | PF00350 |
Dynamin_N | Domain | 81 | 255 | 8.7e-41 | 140.4 | Dynamin family |
XP_057800093.1 |
Pfam | PF01031 |
Dynamin_M | Family | 263 | 547 | 1.2e-60 | 205.9 | Dynamin central region |
XP_057800093.1 |
Pfam | PF02212 |
GED | Family | 588 | 676 | 2.9e-11 | 44.1 | Dynamin GTPase effector domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。