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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr03G001798

Chromosome: Chr03 Coordinates: 24598375-24600780 Strand: - Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr03G001798
NameSmilChr03G001798
Descriptiondynamin-related protein 4C-like
Chromosome / SeqIDChr03 / NC_080389.1
Coordinates and Strand24598375 - 24600780 / -

ID Mapping

NCBI Gene IDLOC131015698
GeneID131015698
locus_tag-
NCBI NameLOC131015698
Original querySmilChr03G001798

Open ID mapping

Functional Annotation

SourceGFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Descriptiondynamin-related protein 4C-like
Productdynamin-related protein 4C-like
ArabidopsisAT1G60500 (DRP4C)
Dynamin related protein 4C [Source:NCBI gene (formerly Entrezgene);Acc:842345]
identity=59; qcov=0.932; evalue=0; confidence=high
RiceOs03g0260000
-
identity=55.4; qcov=0.927; evalue=0; confidence=high
GOGO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule); GO:0008017 (microtubule binding); GO:0016020 (membrane)
KEGG-
PfamPF00350 (Dynamin_N); PF01031 (Dynamin_M); PF02212 (GED)
InterPro-
eggNOG-
NRGeneID:131015698

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057800094.1
2 Cytoplasm 细胞质 0.60000 XP_057800094.1
3 Nucleus 细胞核 0.00000 XP_057800094.1
4 Chromosome 染色体 0.00000 XP_057800094.1
5 Centromere 着丝粒 0.00000 XP_057800094.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr3:24598619 C T EMS_canonical_SNV CDS_variant 5 B47,B57,B78,C60,C72
Chr3:24598826 C T EMS_canonical_SNV CDS_variant 2 B62,C62
Chr3:24598895 G A EMS_canonical_SNV CDS_variant 1 B107
Chr3:24598904 C T EMS_canonical_SNV CDS_variant 2 B57,C33
Chr3:24599021 C T EMS_canonical_SNV CDS_variant 2 A13,B83
Chr3:24599079 C T EMS_canonical_SNV CDS_variant 3 A1,B129,B2
Chr3:24599086 G A EMS_canonical_SNV stop_gained 1 B75
Chr3:24599086 G A EMS_canonical_SNV CDS_variant 1 B75
Chr3:24599124 C T EMS_canonical_SNV stop_gained 34 A10,A19,B107,B111,B118,B120,B132,B28,B29,B44,B48,B58,B6,B60,B74,B79,B91,B96,C2,C23,C24,C26,C32,C33,C38,C40,C43,C44,C46,C52,C68,C71,C79,D9
Chr3:24599147 C T EMS_canonical_SNV CDS_variant 2 B2,B71
Chr3:24599168 C T EMS_canonical_SNV CDS_variant 1 B75
Chr3:24599207 G A EMS_canonical_SNV CDS_variant 1 C29

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057800094.1
689 aa
N
1
344
689
Dynamin_N
Dynamin_M
GED
C
PF00350 Dynamin_N 84-258 aa PF01031 Dynamin_M 266-550 aa PF02212 GED 594-678 aa
Protein ID Source Domain ID Domain name Type Start aa End aa E-value Score Description
XP_057800094.1 Pfam PF00350 Dynamin_N Domain 84 258 2.5e-41 142.2 Dynamin family
XP_057800094.1 Pfam PF01031 Dynamin_M Family 266 550 6.1e-64 216.7 Dynamin central region
XP_057800094.1 Pfam PF02212 GED Family 594 678 2.6e-10 41.0 Dynamin GTPase effector domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057944111.1
AGATTAATTATTGACCGAGACGTCCTTCTTCTACTCTGATTGGTGGCGGAAAAAAGCAGAATTGCCAAAGAGAAGAGAAAACCACTCTCATTAAGGAATTTATGGGCCCCCTACCCCTAAAGTAAAAGTAAAGGTGATATCCAGGAAATCACCTCCTTCGTAACAGACCTCATAAAATGCAGTAGCAAACTTCTCCATCCCACTACACAACACAAGCAATGCCTTTTGCTGCTAGAGAAGAAATGTCATCATCTACAGTG...

CDS

1 records

Download CDS FASTA
LOC131015698
ATGCCTTTTGCTGCTAGAGAAGAAATGTCATCATCTACAGTGGTAGAGTCCGTGCCTAAGCTGAATCTCCTCAAAATATCCAAACACCATCGCCAACAAGCTGAAGAAGACGACCAAGAATCATCTCCGGCGACGGCTCATGACGCCCCCATCGTTTCCCCCTACAACGCCCGGATCCGGCCGCTGCTGGACACCGTAGACAAGCTGCGCCACCTCAAGATCATGCAGGAAGGCATCCAGCTCCCCACCATCGTCGTCGT...

Protein

1 records

Download Protein FASTA
XP_057800094.1
MPFAAREEMSSSTVVESVPKLNLLKISKHHRQQAEEDDQESSPATAHDAPIVSPYNARIRPLLDTVDKLRHLKIMQEGIQLPTIVVVGDQSSGKSSVLESLAGIRLPRGDGICTRVPLIMRLKNHPSPEPQLSLEFNGKTVQTDEANVVDEIMYTTQEIAGKGKGISNTPLTLVVKKKGVPDLTMIDLPGITRVPVKGQPEDISEQISNIIMKYITPEESIILNVLSAGVDFPTCESIRMSQKVDKTGERTLAVVTKADK...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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