Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001811`

染色体: Chr03 坐标: 24729428-24731395 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001811`
名称	SmilChr03G001811
描述	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	24729428 - 24731395 / `+`

ID 对照

NCBI Gene ID	`LOC131015704`
GeneID	`131015704`
locus_tag	`-`
NCBI Name	`LOC131015704`
原始查询	`SmilChr03G001811`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic
产物	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase%2C chloroplastic
Arabidopsis	`AT4G11570` (AT4G11570) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826761] identity=63.9; qcov=0.997; evalue=5.59e-172; confidence=high
Rice	`Os09g0569100` (EIP6) - identity=56.9; qcov=1.02; evalue=4.11e-139; confidence=high
GO	-
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro	-
eggNOG	-
NR	GeneID:131015704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057800107.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057800107.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057800107.1`
4	Nucleus	细胞核	0.00000	`XP_057800107.1`
5	Chromosome	染色体	0.00000	`XP_057800107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:24730150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:24730151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:24730153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:24730198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr3:24730429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:24730473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B52,B75,B9
`Chr3:24730575`	`CT`	`C`	1bp_deletion	frameshift_variant	3	B119,B95,C71
`Chr3:24730575`	`CT`	`C`	1bp_deletion	CDS_variant	3	B119,B95,C71
`Chr3:24730610`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,D4
`Chr3:24730639`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C71
`Chr3:24730639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:24730702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B52,B75,B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800107.1

378 aa

189

378

HAD_2

Hydrolase

Hydrolase_like

PF13419 HAD_2 134-314 aa PF00702 Hydrolase 214-307 aa PF13242 Hydrolase_like 269-316 aa

XP_057800108.1

378 aa

189

378

HAD_2

Hydrolase

Hydrolase_like

PF13419 HAD_2 134-314 aa PF00702 Hydrolase 214-307 aa PF13242 Hydrolase_like 269-316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800107.1`	Pfam	`PF13419`	HAD_2	Family	134	314	3.1e-18	67.1	Haloacid dehalogenase-like hydrolase
`XP_057800107.1`	Pfam	`PF00702`	Hydrolase	Domain	214	307	5.9e-13	50.4	haloacid dehalogenase-like hydrolase
`XP_057800107.1`	Pfam	`PF13242`	Hydrolase_like	Domain	269	316	2.1e-05	25.1	HAD-hyrolase-like
`XP_057800108.1`	Pfam	`PF13419`	HAD_2	Family	134	314	3.1e-18	67.1	Haloacid dehalogenase-like hydrolase
`XP_057800108.1`	Pfam	`PF00702`	Hydrolase	Domain	214	307	5.9e-13	50.4	haloacid dehalogenase-like hydrolase
`XP_057800108.1`	Pfam	`PF13242`	Hydrolase_like	Domain	269	316	2.1e-05	25.1	HAD-hyrolase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944125.1
GAAAATAAAGGGCGGCATTCGGGTCAAACCAAAACTGGTCCTGCCCGGCCGGCCAGAAAAAGTAATTTGGGCTTTTGCTCCCACAAAGCTTATAAACCACACAAATACGGAAAGCCATATGTGTTAACATTCAACACAAAACAAAAAATCTCCTCTCTCTCTCTCATTTATTTTCTTCCCCTCATCAAACTCTTCTCATTCCACCCACCCAGGAATCTAGGGCTGTTTTGTTGTAATTTATTGTCTTGGCTGGGTGGGGC...

XM_057944124.1
GGTCCTGCCCGGCCGGCCAGAAAAAGTAATTTGGGCTTTTGCTCCCACAAAGCTTATAAACCACACAAATACGGAAAGCCATATGTGTTAACATTCAACACAAAACAAAAAATCTCCTCTCTCTCTCTCATTTATTTTCTTCCCCTCATCAAACTCTTCTCATTCCACCCACCCAGGTTTGAGGCTTCTCTTCCTTTTATTCCCTCTGTAAATATACATACAAAGAATAGGCAAACTCGATTGGAATCTAGGGCTGTTTT...

CDS

2 records

下载 CDS FASTA

LOC131015704
ATGGCGGATTCAATAGCTGCAACATCTCTCTTGGGGCACCGACCGATTTTTAGTAGCTATAATTGGAAATATGCCGCCGGCAAGCACAACTGCCGGCTGTCTTTTACCAAGTTCGTGGATAGGAAACATGCTATTGTTATCACACCTTCTGTGCAAAGATGGCATGTTAAGGTTAAGCGACCGATTAGGTCTGTGATAAAGGCTCAAGCCGCGGAATTGACTAGAGAGGCACGTTCCTATCGTGAGGAAGAGCGAATACC...

Protein

2 records

下载 Protein FASTA

XP_057800107.1
MADSIAATSLLGHRPIFSSYNWKYAAGKHNCRLSFTKFVDRKHAIVITPSVQRWHVKVKRPIRSVIKAQAAELTREARSYREEERIPRGFRPGIDSGVDNRPGLWPPENKADNPALKNPLLRHERMGCGWLGAIFEWEGVLVEDNPDLEKQAWLTLAQEEGKSPPPAFMLRRIEGMKNEQAIAEVLCWSRDPGVLKRMGSRKEEIHQALQGGIYRFRSGSQAFLNVLVHHKVPVALVSTRPRKSLERAIAVIGIEGVFSV...

XP_057800108.1
MADSIAATSLLGHRPIFSSYNWKYAAGKHNCRLSFTKFVDRKHAIVITPSVQRWHVKVKRPIRSVIKAQAAELTREARSYREEERIPRGFRPGIDSGVDNRPGLWPPENKADNPALKNPLLRHERMGCGWLGAIFEWEGVLVEDNPDLEKQAWLTLAQEEGKSPPPAFMLRRIEGMKNEQAIAEVLCWSRDPGVLKRMGSRKEEIHQALQGGIYRFRSGSQAFLNVLVHHKVPVALVSTRPRKSLERAIAVIGIEGVFSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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