Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G001818`

Chromosome: Chr03 Coordinates: 24844864-24846175 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G001818`
Name	SmilChr03G001818
Description	uncharacterized SmilChr03G001818
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	24844864 - 24846175 / `+`

ID Mapping

NCBI Gene ID	`LOC131019198`
GeneID	`131019198`
locus_tag	`-`
NCBI Name	`LOC131019198`
Original query	`SmilChr03G001818`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; Arabidopsis/Rice homolog
Description	hit=Os09g0480300; species=rice; confidence=low
Product	hit=Os09g0480300; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os09g0480300` - identity=32.1; qcov=0.662; evalue=2.25e-12; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131019198

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803855.1`
2	Chromosome	染色体	0.00000	`XP_057803855.1`
3	Centromere	着丝粒	0.00000	`XP_057803855.1`
4	Chromatin	染色质	0.00000	`XP_057803855.1`
5	Telomere	端粒	0.00000	`XP_057803855.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:24845371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B39,B91,D6,D7
`Chr3:24845382`	`GT`	`G`	1bp_deletion	frameshift_variant	4	B39,B91,D6,D7
`Chr3:24845382`	`GT`	`G`	1bp_deletion	CDS_variant	4	B39,B91,D6,D7
`Chr3:24845402`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B78
`Chr3:24845428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B74,B78,B95
`Chr3:24845451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B66
`Chr3:24845461`	`G`	`A`	EMS_canonical_SNV	stop_gained	30	A1,A22,B1,B124,B129,B132,B2,B33,B39,B47,B50,B57,B60,B64,B69,B78,B85,B91,C24,C33,C34,C42,C6,C60,C63,C67,C82,D11,D6,D7
`Chr3:24845489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:24845505`	`A`	`AG`	1bp_insertion	frameshift_variant	30	A1,A22,B1,B124,B129,B132,B2,B39,B47,B49,B50,B60,B64,B69,B78,B85,B91,C12,C24,C33,C34,C42,C6,C60,C63,C67,C82,D11,D6,D7
`Chr3:24845510`	`A`	`AG`	1bp_insertion	frameshift_variant	124	A1,A10,A13,A15,A2,A20,A21,A22,A25,A3,A4,A6,B1,B100,B103,B105,B107,B11,B110,B111,B114,B117,B119,B123,B124,B126,B128,B129,B131,B132,B134,B135,B137,B15,B16,B19,B2,B20,B24,B29,B30,B31,B32,B33,B36,B39,B45,B47,B48,B49,B5,B50,B54,B57,B60,B64,B65,B66,B69,B7,B70,B71,B73,B74,B76,B78,B79,B8,B81,B83,B85,B86,B87,B89,B91,B97,B98,B99,C11,C12,C13,C14,C15,C17,C21,C23,C24,C28,C30,C31,C33,C34,C35,C42,C47,C49,C5,C50,C53,C54,C55,C57,C58,C59,C6,C60,C61,C63,C67,C69,C7,C70,C75,C76,C77,C78,C82,C83,C85,D11,D5,D6,D7,D9
`Chr3:24845519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B74,D10,D7
`Chr3:24845522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,D7

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

Open domain search

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057947872.1
TCTAGTTCATTTGTCATGGTTCTGATACTATTCATAATCTGTGCAACTTTGTAGAGAACTGCAGCTTGTTTAAATCAAGAAAGCTGTGTTTGTTTTGATTTTCAATTTTATCTTAAAATCACAGGGATTGGAGAAAGTTGTGGCTGCTCTGACACCTTTTGCAGAGCATAGAAATTGTGCACTTCACGTGTACATGAACTGGAAGAAGGAGCATAAGGGTGCAACTTTGAAAATTTTCTTTTGGAGGGCTGTTAGAAGCA...

CDS

1 records

Download CDS FASTA

LOC131019198
ATGCATGTGGTGGCTGCCATTCATTTCATGAATCATGATCCAGTTCACTACGTGCATCAATATTATTCTGTCGAGAAATATTTGCTAGGATATCAATGTGGACTAGAACCTGTTAGAGGGGAAAAAATGTGGCCAGAGGTTTCTGGATTTAAGGTGAAGCCACCTATGATCTTAAAAAAAGCTGGAAGGCCCAAAAAGAAAAGAATTAGGGGCATTGCTGAACGAGATCCAGCAAATCCGAATAAGTTGAAGAAGGATGG...

Protein

1 records

Download Protein FASTA

XP_057803855.1
MHVVAAIHFMNHDPVHYVHQYYSVEKYLLGYQCGLEPVRGEKMWPEVSGFKVKPPMILKKAGRPKKKRIRGIAERDPANPNKLKKDGMQMACKNCGGVGHNKRPCKVDRVELPTKEKGKRGQSAKQNPPVAAASTSMGKSRKTPQASEASTIAKERNFAR

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser