Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001821`

染色体: Chr03 坐标: 24889803-24897762 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001821`
名称	SmilChr03G001821
描述	serine/threonine-protein kinase BSK7-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	24889803 - 24897762 / `-`

ID 对照

NCBI Gene ID	`LOC131015754`
GeneID	`131015754`
locus_tag	`-`
NCBI Name	`LOC131015754`
原始查询	`SmilChr03G001821`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase BSK7-like
产物	serine/threonine-protein kinase BSK7-like
Arabidopsis	`AT1G63500` (BSK7) kinase with tetratricopeptide repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842656] identity=81; qcov=0.994; evalue=0; confidence=high
Rice	`Os03g0825300` (OsRLCK119) - identity=62.1; qcov=1.01; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0009742 (brassinosteroid mediated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF25575 (TPR_BSK1_C)
InterPro	-
eggNOG	-
NR	GeneID:131015754

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057800159.1`
2	Cytosol	细胞质基质	0.40000	`XP_057800159.1`
3	Nucleus	细胞核	0.00000	`XP_057800159.1`
4	Chromosome	染色体	0.00000	`XP_057800159.1`
5	Centromere	着丝粒	0.00000	`XP_057800159.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:24892225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B91,C39,D6,D7
`Chr3:24894653`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B91
`Chr3:24894653`	`TG`	`T`	1bp_deletion	CDS_variant	1	B91
`Chr3:24896124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr3:24896132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800159.1

488 aa

244

488

Pkinase

PK_Tyr_Ser-Thr

TPR_BSK1_C

PF00069 Pkinase 72-307 aa PF07714 PK_Tyr_Ser-Thr 72-309 aa PF25575 TPR_BSK1_C 341-458 aa

XP_057800161.1

488 aa

244

488

Pkinase

PK_Tyr_Ser-Thr

TPR_BSK1_C

PF00069 Pkinase 72-307 aa PF07714 PK_Tyr_Ser-Thr 72-309 aa PF25575 TPR_BSK1_C 341-458 aa

XP_057800162.1

488 aa

244

488

Pkinase

PK_Tyr_Ser-Thr

TPR_BSK1_C

PF00069 Pkinase 72-307 aa PF07714 PK_Tyr_Ser-Thr 72-309 aa PF25575 TPR_BSK1_C 341-458 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800159.1`	Pfam	`PF00069`	Pkinase	Domain	72	307	2.4e-22	80.3	Protein kinase domain
`XP_057800159.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	72	309	2.9e-26	93.0	Protein tyrosine and serine/threonine kinase
`XP_057800159.1`	Pfam	`PF25575`	TPR_BSK1_C	Repeat	341	458	1.5e-62	209.4	Serine/threonine-protein kinase BSK1-like, TPR repeats
`XP_057800161.1`	Pfam	`PF00069`	Pkinase	Domain	72	307	2.4e-22	80.3	Protein kinase domain
`XP_057800161.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	72	309	2.9e-26	93.0	Protein tyrosine and serine/threonine kinase
`XP_057800161.1`	Pfam	`PF25575`	TPR_BSK1_C	Repeat	341	458	1.5e-62	209.4	Serine/threonine-protein kinase BSK1-like, TPR repeats
`XP_057800162.1`	Pfam	`PF00069`	Pkinase	Domain	72	307	2.4e-22	80.3	Protein kinase domain
`XP_057800162.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	72	309	2.9e-26	93.0	Protein tyrosine and serine/threonine kinase
`XP_057800162.1`	Pfam	`PF25575`	TPR_BSK1_C	Repeat	341	458	1.5e-62	209.4	Serine/threonine-protein kinase BSK1-like, TPR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057944178.1
GTATAATTTATAGATGTGTGGTGCGCAGGAGAATCACAAAATAGCATTAGTAAAAGGAAAACAGAAAGGCAATCATGAATATTATGTCGGTGGAAATTGAAAAAAAGAAATAGCAAAACACATTACATTACATTACCCCTCTTCACGCCCTAAATAGATCTACACACACTCACACACACCCCACACGCACACATCTGTGTGCATCTGTATCTATTTTATATCTATCATTTATGTTCACCTGTCTTTACATCTGCCCCCGA...

XM_057944179.1
GTATAATTTATAGATGTGTGGTGCGCAGGAGAATCACAAAATAGCATTAGTAAAAGGAAAACAGAAAGGCAATCATGAATATTATGTCGGTGGAAATTGAAAAAAAGAAATAGCAAAACACATTACATTACATTACCCCTCTTCACGCCCTAAATAGATCTACACACACTCACACACACCCCACACGCACACATCTGTGTGCATCTGTATCTATTTTATATCTATCATTTATGTTCACCTGTCTTTACATCTGCCCCCGA...

CDS

3 records

下载 CDS FASTA

LOC131015754
ATGGGCTGTCACTGTTCAAAGCTGACCTTGTGTTGTTTTAACTCGGAGCATAATGGACCTGTTCATGAAGCTAATAATGCTGAAAACGAGGAGAAAAGTGAAATTGGGGATTTGCCTACATTTCGTGAATTTTCTGTTGAACAACTTAGGATAGCTACATCTGGGTTTGCAGTAGAGAACATAGTTTCTGAACATGGGGAGAAAGCTCCAAATGTGGTTTATAAGGGGAAATTGGATAATCAGAGGCGGATAGCTGTCAA...

Protein

3 records

下载 Protein FASTA

XP_057800159.1
MGCHCSKLTLCCFNSEHNGPVHEANNAENEEKSEIGDLPTFREFSVEQLRIATSGFAVENIVSEHGEKAPNVVYKGKLDNQRRIAVKRFNRSAWPDARQFMEEAKAVGQLRNYRLANLLGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYIAQALEYCTSKGRALYHDLNAYRIVFDYDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLI...

XP_057800161.1
MGCHCSKLTLCCFNSEHNGPVHEANNAENEEKSEIGDLPTFREFSVEQLRIATSGFAVENIVSEHGEKAPNVVYKGKLDNQRRIAVKRFNRSAWPDARQFMEEAKAVGQLRNYRLANLLGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYIAQALEYCTSKGRALYHDLNAYRIVFDYDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器