Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001825

染色体: Chr03 坐标: 25000658-25003532 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001825
名称SmilChr03G001825
描述probable folate-biopterin transporter 7
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向25000658 - 25003532 / -

ID 对照

NCBI Gene IDLOC131015716
GeneID131015716
locus_tag-
NCBI NameLOC131015716
原始查询SmilChr03G001825

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable folate-biopterin transporter 7
产物probable folate-biopterin transporter 7
ArabidopsisAT1G64890 (AT1G64890)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842797]
identity=58.4; qcov=0.886; evalue=1.91e-125; confidence=high
RiceOs05g0389400
-
identity=51.9; qcov=0.924; evalue=2.77e-116; confidence=high
GOGO:0016020 (membrane)
KEGG-
PfamPF03092 (BT1); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131015716

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057800121.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057800121.1
3 Vacuole membrane 液泡膜 0.40000 XP_057800120.1
4 Vacuole 液泡 0.20000 XP_057800120.1
5 Nucleus 细胞核 0.00000 XP_057800121.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:25000876 C T EMS_canonical_SNV CDS_variant 1 A11
Chr3:25000943 C T EMS_canonical_SNV CDS_variant 4 B105,B114,C54,C82
Chr3:25000990 G A EMS_canonical_SNV CDS_variant 1 B105
Chr3:25001159 G A EMS_canonical_SNV CDS_variant 1 B20
Chr3:25001173 C T EMS_canonical_SNV CDS_variant 1 B31
Chr3:25001219 G A EMS_canonical_SNV CDS_variant 3 B107,B49,B87
Chr3:25001231 C T EMS_canonical_SNV CDS_variant 1 B75
Chr3:25001326 G A EMS_canonical_SNV CDS_variant 3 B107,B49,B87
Chr3:25001465 G A EMS_canonical_SNV CDS_variant 2 B31,C60
Chr3:25001476 C T EMS_canonical_SNV CDS_variant 1 B31
Chr3:25003002 G A EMS_canonical_SNV CDS_variant 1 B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057800120.1
437 aa
N
1
218
437
BT1
MFS_1
C
PF03092 BT1 22-434 aa PF07690 MFS_1 57-382 aa
XP_057800121.1
396 aa
N
1
198
396
BT1
MFS_1
C
PF03092 BT1 47-393 aa PF07690 MFS_1 51-341 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057800120.1 Pfam PF03092 BT1 Family 22 434 7.9e-113 378.2 BT1 family
XP_057800120.1 Pfam PF07690 MFS_1 Family 57 382 4.6e-14 52.8 Major Facilitator Superfamily
XP_057800121.1 Pfam PF03092 BT1 Family 47 393 1.4e-84 285.0 BT1 family
XP_057800121.1 Pfam PF07690 MFS_1 Family 51 341 3.6e-11 43.3 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057944137.1
AATCGACATACACGTGGATACCTCTAGTGGTGGATTCAATTCGCAGGAATCGAGACGCATGTTTACTACACAACGAGTAAGTTAATTTTATTGTTGTGTACGTTTGTAATCTCTACACATGAATCAATTGTAAATCTAGATCTAATCCTTGAATGTATATTCCGCTGCGTATCATTAGATGATGTCAAGGATAACCAACAACTCCACCGCCTTCTGCATCCGAATTTCCGACTATATTCCAAGGAACATCCTCCTCCACA...
XM_057944138.1
GCCTTCTGCATCCGAATTTCCGACTATATTCCAAGGAACATCCTCCTCCACATCACCATCCTCGATTTCATTAATTTGTTTGAAATCATTAATGTGCAGCGATGGTGAGTGCGCGCGGGATTGGCAGAAAGAGGAAATTATTGCTAGGGATTGGGTATTTTGTGCAGGGGCTGAGGTGTTTCCCATGGATGGGGGTGAATTTCTTTCTCAAGGATGGGATGCGAGTGGCTCCCGCCACTCTTCAGATCCTTCAGAATTCG...

CDS

2 records

下载 CDS FASTA
LOC131015716
ATGGTGAGTGCGCGCGGGATTGGCAGAAAGAGGAAATTATTGCTAGGGATTGGGTATTTTGTGCAGGGGCTGAGGTGTTTCCCATGGATGGGGGTGAATTTCTTTCTCAAGGATGGGATGCGAGTGGCTCCCGCCACTCTTCAGATCCTTCAGAATTCGGCCAATTTGCCCATGGTGGCTAAACCTTTGTACGGCATTCTCTCCGATTCCTTCTACGTCTTCGGCGAGCATCGTATCCCTTACATCGCCTTTGGAGCTTT...
LOC131015716
ATGGGATGCGAGTGGCTCCCGCCACTCTTCAGATCCTTCAGAATTCGGCCAATTTGCCCATGGTGGCTAAACCTTTGTACGGCATTCTCTCCGATTCCTTCTACGTCTTCGGCGAGCATCGTATCCCTTACATCGCCTTTGGAGGCAATATCATGGATGGCTATTGCAATCTTTGCTGCATCAGACATCTCCTTTGCATCTGTTACATTTTATCTCCTTCTTGGGAATTTGGGTGCTTCTATAGTCGAGGTTGCAAATGA...

Protein

2 records

下载 Protein FASTA
XP_057800120.1
MVSARGIGRKRKLLLGIGYFVQGLRCFPWMGVNFFLKDGMRVAPATLQILQNSANLPMVAKPLYGILSDSFYVFGEHRIPYIAFGAFLQAISWMAIAIFAASDISFASVTFYLLLGNLGASIVEVANDAIVAETAKQPTSSSKKTKSSSSGGLQSFVWMASSIGGVLGNLIGGILIDRFSPRMMFLIYGILLSFQFLIIGLIRETTLALPTSSSLGFRKQLSELFAALKKPDLLYAIIWFAFSYAVIPALTGTMFFYQTL...
XP_057800121.1
MGCEWLPPLFRSFRIRPICPWWLNLCTAFSPIPSTSSASIVSLTSPLEAISWMAIAIFAASDISFASVTFYLLLGNLGASIVEVANDAIVAETAKQPTSSSKKTKSSSSGGLQSFVWMASSIGGVLGNLIGGILIDRFSPRMMFLIYGILLSFQFLIIGLIRETTLALPTSSSLGFRKQLSELFAALKKPDLLYAIIWFAFSYAVIPALTGTMFFYQTLHLKIESSLLGISKVVGQAAMLLWGAIYNRHLKSISSRKLIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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