Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001832`

染色体: Chr03 坐标: 25095084-25123342 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001832`
名称	SmilChr03G001832
描述	xanthine dehydrogenase 2-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	25095084 - 25123342 / `-`

ID 对照

NCBI Gene ID	`LOC131015788`
GeneID	`131015788`
locus_tag	`-`
NCBI Name	`LOC131015788`
原始查询	`SmilChr03G001832`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xanthine dehydrogenase 2-like
产物	xanthine dehydrogenase 2-like
Arabidopsis	`AT4G34890` (XDH1) xanthine dehydrogenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:829641] identity=72.3; qcov=1; evalue=0; confidence=high
Rice	`Os03g0429800` (XDH) - identity=69.3; qcov=1; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0016491 (oxidoreductase activity); GO:0051537 (2 iron, 2 sulfur cluster binding); GO:0071949 (FAD binding)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00232 (Caffeine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00111 (Fer2); PF00941 (FAD_binding_5); PF01315 (Ald_Xan_dh_C); PF01799 (Fer2_2); PF02738 (MoCoBD_1); PF03450 (CO_deh_flav_C); PF20256 (MoCoBD_2)
InterPro	-
eggNOG	-
NR	GeneID:131015788

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057800195.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057800194.1`
3	Nucleus	细胞核	0.20000	`XP_057800195.1`
4	Chromosome	染色体	0.00000	`XP_057800194.1`
5	Centromere	着丝粒	0.00000	`XP_057800194.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:25095321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B17,B21,C28,C74
`Chr3:25095374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,B57,C28
`Chr3:25095456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,C18,C2
`Chr3:25098023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr3:25098142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B49,B87,C60
`Chr3:25102704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B91,C39,D6
`Chr3:25103230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B49,B87,C60
`Chr3:25110471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B119,C87
`Chr3:25110512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B5,B57,C28
`Chr3:25111846`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:25111864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:25112032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B68,C48,C62,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057800194.1

1370 aa

685

1370

Fer2

Fer2_2

FAD_binding_5

CO_deh_flav_C

Ald_Xan_dh_C

MoCoBD_1

MoCoBD_2

PF00111 Fer2 28-90 aa PF01799 Fer2_2 102-176 aa PF00941 FAD_binding_5 271-448 aa PF03450 CO_deh_flav_C 456-562 aa PF01315 Ald_Xan_dh_C 621-728 aa PF02738 MoCoBD_1 747-984 aa PF20256 MoCoBD_2 1010-1281 aa

XP_057800195.1

1290 aa

645

1290

Fer2_2

FAD_binding_5

CO_deh_flav_C

Ald_Xan_dh_C

MoCoBD_1

MoCoBD_2

PF01799 Fer2_2 22-96 aa PF00941 FAD_binding_5 191-368 aa PF03450 CO_deh_flav_C 376-482 aa PF01315 Ald_Xan_dh_C 541-648 aa PF02738 MoCoBD_1 667-904 aa PF20256 MoCoBD_2 930-1201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057800194.1`	Pfam	`PF00111`	Fer2	Domain	28	90	3.2e-07	30.9	2Fe-2S iron-sulfur cluster binding domain
`XP_057800194.1`	Pfam	`PF01799`	Fer2_2	Domain	102	176	1.7e-31	108.9	[2Fe-2S] binding domain
`XP_057800194.1`	Pfam	`PF00941`	FAD_binding_5	Domain	271	448	6.9e-45	153.6	FAD binding domain in molybdopterin dehydrogenase
`XP_057800194.1`	Pfam	`PF03450`	CO_deh_flav_C	Domain	456	562	9.7e-28	97.0	CO dehydrogenase flavoprotein C-terminal domain
`XP_057800194.1`	Pfam	`PF01315`	Ald_Xan_dh_C	Domain	621	728	5.9e-29	101.3	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
`XP_057800194.1`	Pfam	`PF02738`	MoCoBD_1	Domain	747	984	3.8e-87	292.1	Molybdopterin cofactor-binding domain
`XP_057800194.1`	Pfam	`PF20256`	MoCoBD_2	Domain	1010	1281	7.9e-90	301.9	Molybdopterin cofactor-binding domain
`XP_057800195.1`	Pfam	`PF01799`	Fer2_2	Domain	22	96	1.6e-31	108.9	[2Fe-2S] binding domain
`XP_057800195.1`	Pfam	`PF00941`	FAD_binding_5	Domain	191	368	6.4e-45	153.7	FAD binding domain in molybdopterin dehydrogenase
`XP_057800195.1`	Pfam	`PF03450`	CO_deh_flav_C	Domain	376	482	8.8e-28	97.2	CO dehydrogenase flavoprotein C-terminal domain
`XP_057800195.1`	Pfam	`PF01315`	Ald_Xan_dh_C	Domain	541	648	5.4e-29	101.4	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
`XP_057800195.1`	Pfam	`PF02738`	MoCoBD_1	Domain	667	904	3.4e-87	292.3	Molybdopterin cofactor-binding domain
`XP_057800195.1`	Pfam	`PF20256`	MoCoBD_2	Domain	930	1201	6.9e-90	302.1	Molybdopterin cofactor-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057944211.1
GGGTTTGCCAATTTATCTTTTTGACGGGACAAAATTTGTCCAAATAACTTTTTCATTGAGGAAAAATCGAATGCCAAGTTCATGAATTTGAATGCAATTAATCCCTTTTAACTTTTTATAATTATTGCACGCACCGAAATGTAGTAATATAAGCATAAGATTTCGTGATGGGTATGAGATGAGTTTCCGAAGTGATTATTGGGATAAAACCTGCAGAAATGTCAATTTTGAATGCACGCGCACGTCAGCAAGCTTTCTGC...

XM_057944212.1
ATATGGGCCTCACTGGTACAAAACTTGGTTGTGGCGAAGGAGGTTGTGGGGCATGCACGGTGATGATTTCCTATCTTGACCAAAGCTCGAAGAAATGCATCTTGCTATTAACGCATGCTTGGCTCCATTGTATTCTGTTGAAGGAATGCATGTAATTACAGTTGAGGGTATTGGTAGTTGCAGATATGGGTTACATCCAATACAGGAATCATTGGCAAATTCACATGGCTCACAATGTGGTTTTTGTACCCCTGGTTTTG...

CDS

2 records

下载 CDS FASTA

LOC131015788
ATGGGGTCTATGCTGAGTGAGAAGCAAATGGAGAGTGTCGAAGAACAATCTGAACTAAAGGAAGCGATTCTGTACGTTAATGGAGTCCGTCGAGTTTTGCCTGATGGCTTGGCCCACTTAACCCTTCTCGAATATCTCAGAGATATGGGCCTCACTGGTACAAAACTTGGTTGTGGCGAAGGAGGTTGTGGGGCATGCACGGTGATGATTTCCTATCTTGACCAAAGCTCGAAGAAATGTGTGCATCTTGCTATTAACGC...

LOC131015788
ATGCATCTTGCTATTAACGCATGCTTGGCTCCATTGTATTCTGTTGAAGGAATGCATGTAATTACAGTTGAGGGTATTGGTAGTTGCAGATATGGGTTACATCCAATACAGGAATCATTGGCAAATTCACATGGCTCACAATGTGGTTTTTGTACCCCTGGTTTTGTTATGTCCATGTATGCCCTACTGAGGTCATCCAAAAAACCACCTACAGAAGAGGACATCAAAGAAAATCTTGCCGGAAATTTATGTCGGTGCAC...

Protein

2 records

下载 Protein FASTA

XP_057800194.1
MGSMLSEKQMESVEEQSELKEAILYVNGVRRVLPDGLAHLTLLEYLRDMGLTGTKLGCGEGGCGACTVMISYLDQSSKKCVHLAINACLAPLYSVEGMHVITVEGIGSCRYGLHPIQESLANSHGSQCGFCTPGFVMSMYALLRSSKKPPTEEDIKENLAGNLCRCTGYRPIIDAFRVFARTDDALYTIRSSGLSSSEFVCPSTGKPCSCGQNIKDDEGTTTRRICNSDILKPVSYSDIDGAAYTSKELIFPPELLLRKS...

XP_057800195.1
MHLAINACLAPLYSVEGMHVITVEGIGSCRYGLHPIQESLANSHGSQCGFCTPGFVMSMYALLRSSKKPPTEEDIKENLAGNLCRCTGYRPIIDAFRVFARTDDALYTIRSSGLSSSEFVCPSTGKPCSCGQNIKDDEGTTTRRICNSDILKPVSYSDIDGAAYTSKELIFPPELLLRKSAALFLTGSNGLKWHRPVSLQHVLYIKTKYPNAKLVVGNTEVGIETRLKSFHYPVLVHVAHVPELNKLNIKDEGLEIGASV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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