当前解析结果
SmilChr03G001841| 统一新 Gene ID | SmilChr03G001841 |
|---|---|
| 名称 | SmilChr03G001841 |
| 描述 | ABC transporter G family member 15-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 25239245 - 25254649 / - |
| NCBI Gene ID | LOC131013915 |
|---|---|
| GeneID | 131013915 |
| locus_tag | - |
| NCBI Name | LOC131013915 |
| 原始查询 | SmilChr03G001841 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 15-like |
| 产物 | ABC transporter G family member 15-like |
| Arabidopsis | AT3G21090 (ABCG15)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:821661] identity=62.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0222200 (OsABCG12)- identity=59.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013915 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797817.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057797817.1 |
| 3 | Vacuole | 液泡 | 0.60000 | XP_057797819.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797817.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797817.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:25239414 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:25239507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:25239548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:25239608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B129,B132,B2,C12 |
Chr3:25240704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr3:25241495 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B68,D2 |
Chr3:25241495 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B68,D2 |
Chr3:25242833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:25242912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:25242927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B78,C23 |
Chr3:25243144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C2 |
Chr3:25243247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B74,B94,C47,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797817.1PF00005
ABC_tran 61-208 aa
PF19055
ABC2_membrane_7 237-291 aa
PF01061
ABC2_membrane 372-581 aa
XP_057797818.1PF00005
ABC_tran 61-208 aa
PF19055
ABC2_membrane_7 237-291 aa
PF01061
ABC2_membrane 372-581 aa
XP_057797819.1PF00005
ABC_tran 2-140 aa
PF19055
ABC2_membrane_7 169-223 aa
PF01061
ABC2_membrane 304-513 aa
XP_057797821.1PF00005
ABC_tran 17-113 aa
PF19055
ABC2_membrane_7 142-196 aa
PF01061
ABC2_membrane 277-486 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797817.1 |
Pfam | PF00005 |
ABC_tran | Domain | 61 | 208 | 2.9e-23 | 83.7 | ABC transporter |
XP_057797817.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 237 | 291 | 3.8e-09 | 36.7 | ABC-2 type transporter |
XP_057797817.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 372 | 581 | 3.5e-38 | 132.0 | ABC-2 type transporter |
XP_057797818.1 |
Pfam | PF00005 |
ABC_tran | Domain | 61 | 208 | 2.9e-23 | 83.7 | ABC transporter |
XP_057797818.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 237 | 291 | 3.8e-09 | 36.7 | ABC-2 type transporter |
XP_057797818.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 372 | 581 | 3.5e-38 | 132.0 | ABC-2 type transporter |
XP_057797819.1 |
Pfam | PF00005 |
ABC_tran | Domain | 2 | 140 | 1.9e-21 | 77.8 | ABC transporter |
XP_057797819.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 169 | 223 | 2.8e-09 | 37.1 | ABC-2 type transporter |
XP_057797819.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 304 | 513 | 2.8e-38 | 132.3 | ABC-2 type transporter |
XP_057797821.1 |
Pfam | PF00005 |
ABC_tran | Domain | 17 | 113 | 2.9e-12 | 48.1 | ABC transporter |
XP_057797821.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 142 | 196 | 2.7e-09 | 37.1 | ABC-2 type transporter |
XP_057797821.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 277 | 486 | 2.5e-38 | 132.4 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。