Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001905`

染色体: Chr03 坐标: 26617151-26619803 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001905`
名称	SmilChr03G001905
描述	heat shock cognate 70 kDa protein-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	26617151 - 26619803 / `+`

ID 对照

NCBI Gene ID	`LOC131013960`
GeneID	`131013960`
locus_tag	`-`
NCBI Name	`LOC131013960`
原始查询	`SmilChr03G001905`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heat shock cognate 70 kDa protein-like
产物	heat shock cognate 70 kDa protein-like
Arabidopsis	`AT3G12580` (HSP70) heat shock protein 70 [Source:NCBI gene (formerly Entrezgene);Acc:820438] identity=73.2; qcov=0.992; evalue=0; confidence=high
Rice	`Os01g0840100` (OsMed37_1) - identity=75.3; qcov=0.992; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:131013960

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057797882.1`
2	Cytosol	细胞质基质	1.00000	`XP_057797882.1`
3	Nucleus	细胞核	0.00000	`XP_057797882.1`
4	Chromosome	染色体	0.00000	`XP_057797882.1`
5	Centromere	着丝粒	0.00000	`XP_057797882.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:26617254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B137,B16,B2,C19
`Chr3:26617289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B123,C62
`Chr3:26617292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B54,B86
`Chr3:26617307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:26617321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr3:26617323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C71
`Chr3:26617326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:26617327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr3:26617386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B72,C51,D4
`Chr3:26617393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr3:26617401`	`C`	`CCA`	2bp_insertion	frameshift_variant	2	B117,B78
`Chr3:26617401`	`C`	`CCA`	2bp_insertion	CDS_variant	2	B117,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797882.1

624 aa

312

624

HSP70

MreB_Mbl

PF00012 HSP70 7-620 aa PF06723 MreB_Mbl 124-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797882.1`	Pfam	`PF00012`	HSP70	Family	7	620	2e-231	770.1	Hsp70 protein
`XP_057797882.1`	Pfam	`PF06723`	MreB_Mbl	Family	124	381	4.4e-13	49.5	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941899.1
TTATAGTATTGCAGTAGAATTTTTCTATATTCTCAACGAGCATCCAAACTGTCGTTTGATATTTTGCTTCTAGTGTTTATTATTTACCATTTGCAGCAATGGACGGCGAAGGACCGGCGATCGGGATCGATTTGGGGACGACGTACTCGTGCGTGGCCGTGTGGCAGCGCGGCGGCGTGGAGATCATAGCCAATGATCAGGGCAACCGCACCACGCCCTCTTATGTGGCCTTCACCACCGCCGAGCGTCTCATTGGAGAC...

CDS

1 records

下载 CDS FASTA

LOC131013960
ATGGACGGCGAAGGACCGGCGATCGGGATCGATTTGGGGACGACGTACTCGTGCGTGGCCGTGTGGCAGCGCGGCGGCGTGGAGATCATAGCCAATGATCAGGGCAACCGCACCACGCCCTCTTATGTGGCCTTCACCACCGCCGAGCGTCTCATTGGAGACGCCGCCAAGAATCAAGTCGCCGACAATCCTATCAACACTGTTTTCGATGCAAAGAGGCTGATCGGCCGCAAATTTAATGACCCAACTGTTCAGCTTGA...

Protein

1 records

下载 Protein FASTA

XP_057797882.1
MDGEGPAIGIDLGTTYSCVAVWQRGGVEIIANDQGNRTTPSYVAFTTAERLIGDAAKNQVADNPINTVFDAKRLIGRKFNDPTVQLDVKFWPFKVIPDSINRPMMVVTYKGEEKQFSAEEISSMVLTKMKDIAEAYLGSTVKNVVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKGGSGETNVLIFDLGGGTFDVSIVTIDEGIIEVKATAGDTHLGGADFNNRMVNHFVQMLKRKRKNKKATDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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