当前解析结果
SmilChr03G001911| 统一新 Gene ID | SmilChr03G001911 |
|---|---|
| 名称 | SmilChr03G001911 |
| 描述 | uncharacterized SmilChr03G001911 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 26736929 - 26737921 / + |
| NCBI Gene ID | LOC131018604 |
|---|---|
| GeneID | 131018604 |
| locus_tag | - |
| NCBI Name | LOC131018604 |
| 原始查询 | SmilChr03G001911 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| 产物 | aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]; symbol=AT2G06105; hit=AT2G06105; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=37.7; qcov=0.209; evalue=1.36e-06; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018604 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803299.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803299.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803299.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803299.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803299.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:26736932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B53,B66,C6,D2 |
Chr3:26736933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B35,C48 |
Chr3:26736944 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B139,B48,B62,D7 |
Chr3:26736946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B130,B94 |
Chr3:26736947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B108,B35,B83,C36 |
Chr3:26736964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B122,B51,C86 |
Chr3:26736976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:26736977 |
C |
T |
EMS_canonical_SNV | stop_gained | 55 | A14,A18,A20,A23,A25,A5,A7,B103,B107,B109,B120,B121,B124,B130,B131,B138,B15,B3,B32,B37,B38,B39,B44,B5,B54,B6,B62,B63,B78,B81,B82,B84,B85,B91,C21,C23,C25,C34,C39,C43,C46,C50,C55,C60,C63,C73,C77,C79,C83,C84,C85,C9,D6,D7,D8 |
Chr3:26736978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B74,C17,C36,C50 |
Chr3:26736982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,B16 |
Chr3:26736991 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr3:26737042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。