当前解析结果
SmilChr03G001916| 统一新 Gene ID | SmilChr03G001916 |
|---|---|
| 名称 | SmilChr03G001916 |
| 描述 | probable phytol kinase 3, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 26838194 - 26840759 / + |
| NCBI Gene ID | LOC131013965 |
|---|---|
| GeneID | 131013965 |
| locus_tag | - |
| NCBI Name | LOC131013965 |
| 原始查询 | SmilChr03G001916 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phytol kinase 3, chloroplastic |
| 产物 | probable phytol kinase 3%2C chloroplastic |
| Arabidopsis | AT5G58560 (FOLK)Phosphatidate cytidylyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835969] identity=58; qcov=0.876; evalue=4.49e-113; confidence=high |
| Rice | Os01g0832000 (CDS5)- identity=63.7; qcov=0.9; evalue=6.47e-119; confidence=high |
| GO | GO:0016301 (kinase activity) |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013965 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057797887.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057797887.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797887.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797887.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797887.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:26838493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C24 |
Chr3:26838507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B131,C29,C51,D1,D2 |
Chr3:26839390 |
A |
AAC |
2bp_insertion | frameshift_variant | 1 | B100 |
Chr3:26839390 |
A |
AAC |
2bp_insertion | CDS_variant | 1 | B100 |
Chr3:26839950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr3:26840172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C26 |
Chr3:26840337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr3:26840431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,C1 |
Chr3:26840446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。