当前解析结果
SmilChr03G001917| 统一新 Gene ID | SmilChr03G001917 |
|---|---|
| 名称 | SmilChr03G001917 |
| 描述 | uncharacterized SmilChr03G001917 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 26862241 - 26867881 / - |
| NCBI Gene ID | LOC131018607 |
|---|---|
| GeneID | 131018607 |
| locus_tag | - |
| NCBI Name | LOC131018607 |
| 原始查询 | SmilChr03G001917 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=35.1; qcov=0.138; evalue=6.82e-16; confidence=weak |
| Rice | Os12g0142900- identity=26.6; qcov=0.406; evalue=2.32e-39; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018607 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057803303.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803303.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057803303.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803303.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803303.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:26862255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr3:26862289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C45 |
Chr3:26862306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:26862352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:26862355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B117,B140 |
Chr3:26862364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:26862384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:26862386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr3:26862448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr3:26862544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B43,C45 |
Chr3:26862546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr3:26862638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,A4,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803303.1PF00078
RVT_1 222-353 aa
PF17919
RT_RNaseH_2 411-485 aa
PF17917
RT_RNaseH 414-489 aa
PF00075
RNase_H 527-605 aa
PF13456
RVT_3 529-647 aa
PF00665
rve 703-781 aa
PF31073
DUF8803 908-972 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803303.1 |
Pfam | PF00078 |
RVT_1 | Domain | 222 | 353 | 1.6e-28 | 100.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803303.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 411 | 485 | 2.2e-14 | 54.0 | RNase H-like domain found in reverse transcriptase |
XP_057803303.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 414 | 489 | 8.9e-16 | 58.7 | RNase H-like domain found in reverse transcriptase |
XP_057803303.1 |
Pfam | PF00075 |
RNase_H | Domain | 527 | 605 | 1e-06 | 29.7 | RNase H |
XP_057803303.1 |
Pfam | PF13456 |
RVT_3 | Domain | 529 | 647 | 4.8e-17 | 62.7 | Reverse transcriptase-like |
XP_057803303.1 |
Pfam | PF00665 |
rve | Domain | 703 | 781 | 9.6e-10 | 39.4 | Integrase core domain |
XP_057803303.1 |
Pfam | PF31073 |
DUF8803 | Domain | 908 | 972 | 5.6e-12 | 46.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。