Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001920`

染色体: Chr03 坐标: 26900088-26911122 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001920`
名称	SmilChr03G001920
描述	DExH-box ATP-dependent RNA helicase DExH9-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	26900088 - 26911122 / `+`

ID 对照

NCBI Gene ID	`LOC131013969`
GeneID	`131013969`
locus_tag	`-`
NCBI Name	`LOC131013969`
原始查询	`SmilChr03G001920`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH9-like
产物	DExH-box ATP-dependent RNA helicase DExH9-like
Arabidopsis	`AT1G59760` (MTR4) RNA helicase, ATP-dependent, SK12/DOB1 protein [Source:NCBI gene (formerly Entrezgene);Acc:842269] identity=76.7; qcov=1; evalue=0; confidence=high
Rice	`Os12g0279000` - identity=78.2; qcov=0.772; evalue=0; confidence=high
GO	GO:0000460 (maturation of 5.8S rRNA); GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006401 (RNA catabolic process)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF08148 (DSHCT); PF13234 (MTR4_beta-barrel); PF21408 (MTR4-like_stalk); PF22527 (DEXQc_Suv3)
InterPro	-
eggNOG	-
NR	GeneID:131013969

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797889.1`
2	Nucleoplasm	核质	0.60000	`XP_057797889.1`
3	Cytosol	细胞质基质	0.60000	`XP_057797889.1`
4	Cytoplasm	细胞质	0.20000	`XP_057797889.1`
5	Chromosome	染色体	0.00000	`XP_057797889.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:26900380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:26901577`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:26901625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B37
`Chr3:26904807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,C5,C76
`Chr3:26905987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr3:26908764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C25,C9
`Chr3:26910591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797889.1

996 aa

498

996

ResIII

DEAD

DEXQc_Suv3

Helicase_C

MTR4-like_stalk

MTR4_beta-barrel

DSHCT

PF04851 ResIII 75-220 aa PF00270 DEAD 76-225 aa PF22527 DEXQc_Suv3 96-206 aa PF00271 Helicase_C 389-467 aa PF21408 MTR4-like_stalk 521-583 aa PF13234 MTR4_beta-barrel 585-794 aa PF08148 DSHCT 821-991 aa

XP_057797890.1

995 aa

498

995

ResIII

DEAD

DEXQc_Suv3

Helicase_C

MTR4-like_stalk

MTR4_beta-barrel

DSHCT

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797889.1`	Pfam	`PF04851`	ResIII	Family	75	220	4.8e-08	33.8	Type III restriction enzyme, res subunit
`XP_057797889.1`	Pfam	`PF00270`	DEAD	Domain	76	225	3e-28	99.3	DEAD/DEAH box helicase
`XP_057797889.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	96	206	6.9e-09	36.2	DEXQ-box helicase domain of Suv3
`XP_057797889.1`	Pfam	`PF00271`	Helicase_C	Domain	389	467	1.8e-06	28.9	Helicase conserved C-terminal domain
`XP_057797889.1`	Pfam	`PF21408`	MTR4-like_stalk	Domain	521	583	5e-19	69.0	Exosome RNA helicase MTR4-like, stalk
`XP_057797889.1`	Pfam	`PF13234`	MTR4_beta-barrel	Domain	585	794	3.7e-49	168.5	Mtr4-like, beta-barrel domain
`XP_057797889.1`	Pfam	`PF08148`	DSHCT	Domain	821	991	1.1e-56	192.0	DSHCT (NUC185) domain
`XP_057797890.1`	Pfam	`PF04851`	ResIII	Family	75	220	4.8e-08	33.8	Type III restriction enzyme, res subunit
`XP_057797890.1`	Pfam	`PF00270`	DEAD	Domain	76	225	3.1e-28	99.3	DEAD/DEAH box helicase
`XP_057797890.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	96	206	6.8e-09	36.2	DEXQ-box helicase domain of Suv3
`XP_057797890.1`	Pfam	`PF00271`	Helicase_C	Domain	389	467	1.8e-06	28.9	Helicase conserved C-terminal domain
`XP_057797890.1`	Pfam	`PF21408`	MTR4-like_stalk	Domain	521	583	5e-19	69.0	Exosome RNA helicase MTR4-like, stalk
`XP_057797890.1`	Pfam	`PF13234`	MTR4_beta-barrel	Domain	585	793	8.6e-51	173.8	Mtr4-like, beta-barrel domain
`XP_057797890.1`	Pfam	`PF08148`	DSHCT	Domain	820	990	1.1e-56	192.0	DSHCT (NUC185) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941906.1
GTCGTCGTGACCTCCCAACTCCCAAATTATTTGTTTCTCCAACAGCACAGGGCAAAACCAGTAAAACGAATTTCTCCTCCGCCGCCGCCACCCCGCTACCGCTCAGGCCTCAGCCGCCGTCACTAACAAGTCCTAGCATTAAAACCTGCTGTCTCGCTCGAAGACCTTTTCGAGTCACCGGCGGCTTGGAGAAAAGAACATCCCTGTTAGTTACTGATTATCTTGCCCTTTTCTCGCGTACTAATTAGTCATGGGTTCAG...

XM_057941907.1
GTGACCTCCCAACTCCCAAATTATTTGTTTCTCCAACAGCACAGGGCAAAACCAGTAAAACGAATTTCTCCTCCGCCGCCGCCACCCCGCTACCGCTCAGGCCTCAGCCGCCGTCACTAACAAGTCCTAGCATTAAAACCTGCTGTCTCGCTCGAAGACCTTTTCGAGTCACCGGCGGCTTGGAGAAAAGAACATCCCTGTTAGTTACTGATTATCTTGCCCTTTTCTCGCGTACTAATTAGTCATGGGTTCAGTGAAGA...

CDS

2 records

下载 CDS FASTA

LOC131013969
ATGGGTTCAGTGAAGAGAAGGCCTTTGGAGGAGGCGACGGAGGGCTGCGAGACTCCGCCGCTGAAGCAGCGGAGAGAAAATGGGAACGGTGATGAGAATGGGTTGACAGATGAAGCGGTAACTTGCCTTCACGAAGTATCGTATCCGGAGGGCTACGCGCCGTCCACTTCGAGTAATCAGCAATATGAAGCAAAGCCAGCCAAGGAATTCCCCTTTTCTCTCGATCCCTTCCAGCTGGAAGCTATTAAGTGCCTCGACAA...

Protein

2 records

下载 Protein FASTA

XP_057797889.1
MGSVKRRPLEEATEGCETPPLKQRRENGNGDENGLTDEAVTCLHEVSYPEGYAPSTSSNQQYEAKPAKEFPFSLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPCGGD...

XP_057797890.1
MGSVKRRPLEEATEGCETPPLKQRRENGNGDENGLTDEAVTCLHEVSYPEGYAPSTSSNQQYEAKPAKEFPFSLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPCGGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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