Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001921`

染色体: Chr03 坐标: 26925349-26934860 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001921`
名称	SmilChr03G001921
描述	uncharacterized SmilChr03G001921
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	26925349 - 26934860 / `-`

ID 对照

NCBI Gene ID	`LOC131013971`
GeneID	`131013971`
locus_tag	`-`
NCBI Name	`LOC131013971`
原始查询	`SmilChr03G001921`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nucleic acid binding/RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814787]; symbol=AT2G02570; hit=AT2G02570; species=arabidopsis; confidence=high
产物	nucleic acid binding/RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814787]; symbol=AT2G02570; hit=AT2G02570; species=arabidopsis; confidence=high
Arabidopsis	`AT2G02570` (AT2G02570) nucleic acid binding/RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814787] identity=68.7; qcov=0.912; evalue=6.79e-119; confidence=high
Rice	`Os08g0109900` - identity=64.3; qcov=0.898; evalue=2.41e-110; confidence=high
GO	GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006397 (mRNA processing)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF06003 (SMN_Tudor)
InterPro	-
eggNOG	-
NR	GeneID:131013971

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797891.1`
2	Cytoplasm	细胞质	0.40000	`XP_057797894.1`
3	Nucleoplasm	核质	0.20000	`XP_057797893.1`
4	Chromosome	染色体	0.00000	`XP_057797891.1`
5	Centromere	着丝粒	0.00000	`XP_057797891.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:26926809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B71
`Chr3:26926840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr3:26929205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B139,B140,B34,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797891.1

300 aa

150

300

SMN_Tudor

PF06003 SMN_Tudor 99-142 aa

XP_057797892.1

300 aa

150

300

SMN_Tudor

PF06003 SMN_Tudor 99-142 aa

XP_057797893.1

290 aa

145

290

SMN_Tudor

PF06003 SMN_Tudor 89-132 aa

XP_057797894.1

284 aa

142

284

SMN_Tudor

PF06003 SMN_Tudor 83-126 aa

XP_057797896.1

284 aa

142

284

SMN_Tudor

PF06003 SMN_Tudor 83-126 aa

XP_057797897.1

284 aa

142

284

SMN_Tudor

PF06003 SMN_Tudor 83-126 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797891.1`	Pfam	`PF06003`	SMN_Tudor	Domain	99	142	2.8e-05	24.8	Survival motor neuron protein (SMN), Tudor domain
`XP_057797892.1`	Pfam	`PF06003`	SMN_Tudor	Domain	99	142	2.8e-05	24.8	Survival motor neuron protein (SMN), Tudor domain
`XP_057797893.1`	Pfam	`PF06003`	SMN_Tudor	Domain	89	132	2.7e-05	24.9	Survival motor neuron protein (SMN), Tudor domain
`XP_057797894.1`	Pfam	`PF06003`	SMN_Tudor	Domain	83	126	2.6e-05	24.9	Survival motor neuron protein (SMN), Tudor domain
`XP_057797896.1`	Pfam	`PF06003`	SMN_Tudor	Domain	83	126	2.6e-05	24.9	Survival motor neuron protein (SMN), Tudor domain
`XP_057797897.1`	Pfam	`PF06003`	SMN_Tudor	Domain	83	126	2.6e-05	24.9	Survival motor neuron protein (SMN), Tudor domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057941908.1
GGAAATAGGGTTCTGATTTCTCTCTCTTTCTCACCACCGTTCGCTCTCTCTCTCTCTCTGCCCTCTTCCGTTTCAATCTCTCTCGGTCTCTCTCTGCAGCCGCCGGTCGCCGCCGCCTCCGCCTCCTCCGGTCGCCAGTGGCCACGGCCTCACCGCCTCGGGCATCTCCGTCAAGCGCTGCGATTTGCAAGAGCCAAGCAGGCAGCACAGCAGCAGTGCGCCGCCCAGCCCTCGCCGGCTCGCCCCGCCCCGTTTCCTTC...

XM_057941909.1
GGAAATAGGGTTCTGATTTCTCTCTCTTTCTCACCACCGTTCGCTCTCTCTCTCTCTCTGCCCTCTTCCGTTTCAATCTCTCTCGGTCTCTCTCTGCAGCCGCCGGTCGCCGCCGCCTCCGCCTCCTCCGGTCGCCAGTGGCCACGGCCTCACCGCCTCGGGCATCTCCGTCAAGCGCTGCGATTTGCAAGAGCCAAGCAGGCAGCACAGCAGCAGTGCGCCGCCCAGCCCTCGCCGGCTCGCCCCGCCCCGTTTCCTTC...

CDS

6 records

下载 CDS FASTA

LOC131013971
ATGGAAGGCGAAAAGGTGAATATCGAAGAATTGACTGCTAACCTCTCTACTTACGAAGATCAACTTCAGCAGGTGCGCAAACTATTGAATGATGACCCGAAGAATTCCGAGTTTTTGGACATGGAGAAGGAACTTGTGGAGGTGATTGCATTAACAGAGGAGCTTCTGGAAACTGCAAAACAAAATGATGGTAGTTCTGAACTTGTTACTGGCGCTAGTGGTGAAGCATCTCCTGATCTGCAACTTTCTGGGAGCACCTT...

Protein

6 records

下载 Protein FASTA

XP_057797891.1
MEGEKVNIEELTANLSTYEDQLQQVRKLLNDDPKNSEFLDMEKELVEVIALTEELLETAKQNDGSSELVTGASGEASPDLQLSGSTFDKPRTTAINGNKFPIGIKVQAVWSEDGEWYDATIEAHTPNGYYVCYDGWGNKEEVDPDNVRPIQEDTANPLLEAEKIAVATKEALKRKIAQSASKEFETWTVPAKLQIEPNDPEDVKAAKRKKIHAFKSKMRMEAKEVTQNKRQNAWQQFQTTKGKAKKVGFFSGRKRESIFK...

XP_057797892.1
MEGEKVNIEELTANLSTYEDQLQQVRKLLNDDPKNSEFLDMEKELVEVIALTEELLETAKQNDGSSELVTGASGEASPDLQLSGSTFDKPRTTAINGNKFPIGIKVQAVWSEDGEWYDATIEAHTPNGYYVCYDGWGNKEEVDPDNVRPIQEDTANPLLEAEKIAVATKEALKRKIAQSASKEFETWTVPAKLQIEPNDPEDVKAAKRKKIHAFKSKMRMEAKEVTQNKRQNAWQQFQTTKGKAKKVGFFSGRKRESIFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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