当前解析结果
SmilChr03G001930| 统一新 Gene ID | SmilChr03G001930 |
|---|---|
| 名称 | SmilChr03G001930 |
| 描述 | putative E3 ubiquitin-protein ligase LIN-1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 27097994 - 27106553 / + |
| NCBI Gene ID | LOC131013981 |
|---|---|
| GeneID | 131013981 |
| locus_tag | - |
| NCBI Name | LOC131013981 |
| 原始查询 | SmilChr03G001930 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative E3 ubiquitin-protein ligase LIN-1 |
| 产物 | putative E3 ubiquitin-protein ligase LIN-1 |
| Arabidopsis | AT3G06880 (AT3G06880)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819873] identity=23.4; qcov=0.306; evalue=2.93e-15; confidence=weak |
| Rice | Os02g0168400- identity=39.4; qcov=0.33; evalue=8.1e-65; confidence=low |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF04564 (U-box); PF23568 (ARM_LIN); PF23628 (ARM_LIN_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057797907.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057797907.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057797907.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057797907.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797907.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:27099442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B42,B43,B90,B92 |
Chr3:27099595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr3:27099660 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C3 |
Chr3:27099660 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C3 |
Chr3:27100058 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr3:27100149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B22,B23,B31,C51 |
Chr3:27100210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C62,C64 |
Chr3:27100247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,B76,C16,C41,C81 |
Chr3:27100570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B19,C45,D10 |
Chr3:27100663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:27100744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr3:27100758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797907.1PF23568
ARM_LIN 236-458 aa
PF04564
U-box 650-722 aa
PF23628
ARM_LIN_C 755-1125 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797907.1 |
Pfam | PF23568 |
ARM_LIN | Repeat | 236 | 458 | 3.7e-86 | 288.8 | E3 ubiquitin-protein ligase LIN-like, ARM repeat |
XP_057797907.1 |
Pfam | PF04564 |
U-box | Domain | 650 | 722 | 3.3e-08 | 34.3 | U-box domain |
XP_057797907.1 |
Pfam | PF23628 |
ARM_LIN_C | Repeat | 755 | 1125 | 1.7e-128 | 429.4 | Putative E3 ubiquitin-protein ligase LIN, ARM-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。