当前解析结果
SmilChr03G002001| 统一新 Gene ID | SmilChr03G002001 |
|---|---|
| 名称 | SmilChr03G002001 |
| 描述 | uncharacterized SmilChr03G002001 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 29770411 - 29772112 / - |
| NCBI Gene ID | LOC131014036 |
|---|---|
| GeneID | 131014036 |
| locus_tag | - |
| NCBI Name | LOC131014036 |
| 原始查询 | SmilChr03G002001 |
| 来源 | GFF basic annotation; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os07g0577900; species=rice; confidence=low |
| 产物 | hit=Os07g0577900; species=rice; confidence=low |
| Arabidopsis | AT4G14600 (AT4G14600)Target SNARE coiled-coil domain protein [Source:NCBI gene (formerly Entrezgene);Acc:827108] identity=64.9; qcov=0.435; evalue=2.13e-22; confidence=low |
| Rice | Os07g0577900- identity=70.2; qcov=0.435; evalue=2.71e-23; confidence=low |
| GO | - |
| KEGG | smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014036 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057797945.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057797945.1 |
| 3 | Lipid droplet | 脂滴 | 0.20000 | XP_057797945.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797945.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797945.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:29770738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:29771952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B63,B83,B96,C19,C59 |
Chr3:29771958 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B98 |
Chr3:29771958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr3:29772003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr3:29772005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr3:29772010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C30 |
Chr3:29772015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,C85,D10 |
Chr3:29772018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:29772019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:29772022 |
C |
CAA |
2bp_insertion | frameshift_variant | 1 | D6 |
Chr3:29772022 |
C |
CAA |
2bp_insertion | CDS_variant | 1 | D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。