当前解析结果
SmilChr03G002021| 统一新 Gene ID | SmilChr03G002021 |
|---|---|
| 名称 | SmilChr03G002021 |
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 30236730 - 30242794 / - |
| NCBI Gene ID | LOC131014049 |
|---|---|
| GeneID | 131014049 |
| locus_tag | - |
| NCBI Name | LOC131014049 |
| 原始查询 | SmilChr03G002021 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| 产物 | 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like |
| Arabidopsis | AT3G57650 (LPAT2)lysophosphatidyl acyltransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:824934] identity=62.4; qcov=0.984; evalue=3.86e-169; confidence=high |
| Rice | Os11g0637800- identity=58; qcov=0.921; evalue=1.25e-142; confidence=high |
| GO | GO:0003841 (1-acylglycerol-3-phosphate O-acyltransferase activity); GO:0012505 (endomembrane system) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01553 (Acyltransferase); PF16076 (Acyltransf_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014049 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057797956.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057797956.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797956.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797956.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797956.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:30237022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,B98,C50 |
Chr3:30237067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,C48,C58 |
Chr3:30237114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C5 |
Chr3:30237305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr3:30237309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,C32,C38 |
Chr3:30237322 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr3:30237322 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B49 |
Chr3:30238548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C24 |
Chr3:30238622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B38,B39 |
Chr3:30239519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B80,B95,C50 |
Chr3:30239621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:30240493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797956.1PF01553
Acyltransferase 83-214 aa
PF16076
Acyltransf_C 239-312 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797956.1 |
Pfam | PF01553 |
Acyltransferase | Family | 83 | 214 | 9.3e-15 | 55.3 | Acyltransferase |
XP_057797956.1 |
Pfam | PF16076 |
Acyltransf_C | Family | 239 | 312 | 4.5e-23 | 81.7 | Acyltransferase C-terminus |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。