当前解析结果
SmilChr03G002063| 统一新 Gene ID | SmilChr03G002063 |
|---|---|
| 名称 | SmilChr03G002063 |
| 描述 | aldehyde dehydrogenase family 3 member F1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 31472994 - 31508716 / - |
| NCBI Gene ID | LOC131014069 |
|---|---|
| GeneID | 131014069 |
| locus_tag | - |
| NCBI Name | LOC131014069 |
| 原始查询 | SmilChr03G002063 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aldehyde dehydrogenase family 3 member F1-like |
| 产物 | aldehyde dehydrogenase family 3 member F1-like |
| Arabidopsis | AT4G36250 (ALDH3F1)aldehyde dehydrogenase 3F1 [Source:NCBI gene (formerly Entrezgene);Acc:829782] identity=55.5; qcov=0.992; evalue=0; confidence=high |
| Rice | Os02g0646500 (OS-ALDH)- identity=56.8; qcov=0.965; evalue=0; confidence=high |
| GO | GO:0004029 (aldehyde dehydrogenase (NAD+) activity); GO:0005737 (cytoplasm); GO:0006081 (aldehyde metabolic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00340 (Histidine metabolism - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00171 (Aldedh) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014069 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057797974.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057797974.1 |
| 3 | Peroxisome membrane | 过氧化物酶体膜 | 0.20000 | XP_057797974.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057797974.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057797974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:31473149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr3:31473162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B117,B78,D4 |
Chr3:31473194 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B84,C16,C84 |
Chr3:31473317 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr3:31479000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C58 |
Chr3:31507808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,C24,C42,C6 |
Chr3:31507858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:31508449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr3:31508452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B45 |
Chr3:31508537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797974.1PF00171
Aldedh 29-438 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797974.1 |
Pfam | PF00171 |
Aldedh | Family | 29 | 438 | 3.6e-83 | 280.4 | Aldehyde dehydrogenase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。