当前解析结果
SmilChr03G002079| 统一新 Gene ID | SmilChr03G002079 |
|---|---|
| 名称 | SmilChr03G002079 |
| 描述 | uncharacterized SmilChr03G002079 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 31911933 - 31916492 / + |
| NCBI Gene ID | LOC131018658 |
|---|---|
| GeneID | 131018658 |
| locus_tag | - |
| NCBI Name | LOC131018658 |
| 原始查询 | SmilChr03G002079 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=26.5; qcov=0.099; evalue=2.23e-11; confidence=weak |
| Rice | Os08g0202300- identity=31.7; qcov=0.25; evalue=4.17e-60; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018658 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803356.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803356.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803356.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803356.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803356.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:31912020 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B14 |
Chr3:31912020 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B14 |
Chr3:31912048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr3:31912073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B139,B33,B68 |
Chr3:31912111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B139,B68 |
Chr3:31912133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr3:31912198 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C1 |
Chr3:31912198 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C1 |
Chr3:31912343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:31912353 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B68 |
Chr3:31912353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr3:31912367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803356.1PF00078
RVT_1 578-737 aa
PF17919
RT_RNaseH_2 800-898 aa
PF17917
RT_RNaseH 827-927 aa
PF13456
RVT_3 963-1081 aa
PF17921
Integrase_H2C2 1170-1221 aa
PF00665
rve 1238-1334 aa
PF31073
DUF8803 1457-1518 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803356.1 |
Pfam | PF00078 |
RVT_1 | Domain | 578 | 737 | 8.3e-32 | 111.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057803356.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 800 | 898 | 2.4e-20 | 73.2 | RNase H-like domain found in reverse transcriptase |
XP_057803356.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 827 | 927 | 4.1e-15 | 56.5 | RNase H-like domain found in reverse transcriptase |
XP_057803356.1 |
Pfam | PF13456 |
RVT_3 | Domain | 963 | 1081 | 9e-15 | 55.4 | Reverse transcriptase-like |
XP_057803356.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1170 | 1221 | 5.1e-13 | 49.7 | Integrase zinc binding domain |
XP_057803356.1 |
Pfam | PF00665 |
rve | Domain | 1238 | 1334 | 9.9e-18 | 65.0 | Integrase core domain |
XP_057803356.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1457 | 1518 | 5.8e-25 | 87.6 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。