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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G002085

染色体: Chr03 坐标: 32080679-32084537 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G002085
名称SmilChr03G002085
描述pentatricopeptide repeat-containing protein At5g25630-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向32080679 - 32084537 / -

ID 对照

NCBI Gene IDLOC131014066
GeneID131014066
locus_tag-
NCBI NameLOC131014066
原始查询SmilChr03G002085

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g25630-like
产物pentatricopeptide repeat-containing protein At5g25630-like
ArabidopsisAT5G21222 (AT5G21222)
protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832244]
identity=62.7; qcov=0.767; evalue=0; confidence=high
RiceOs01g0228400
-
identity=52.5; qcov=0.742; evalue=2.61e-180; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131014066

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.80000 XP_057797969.1
2 Mitochondrion 线粒体 0.60000 XP_057797969.1
3 Chloroplast stroma 叶绿体基质 0.20000 XP_057797969.1
4 Nucleus 细胞核 0.00000 XP_057797969.1
5 Chromosome 染色体 0.00000 XP_057797969.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:32080872 C T EMS_canonical_SNV CDS_variant 4 B80,B95,B98,C50
Chr3:32082470 C T EMS_canonical_SNV CDS_variant 1 B22
Chr3:32082707 G A EMS_canonical_SNV CDS_variant 5 A14,A24,B46,B50,D3
Chr3:32082764 C T EMS_canonical_SNV CDS_variant 1 B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797969.1
636 aa
N
1
318
636
PPR_3
TPR_24
PPR_1
PPR_2
PPR_long
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 126-186 aa PF23276 TPR_24 128-183 aa PF12854 PPR_1 134-167 aa PF13041 PPR_2 138-185 aa PF17177 PPR_long 140-285 aa PF01535 PPR 143-171 aa PF12854 PPR_1 169-201 aa PF13041 PPR_2 175-222 aa PF01535 PPR 176-204 aa PF13812 PPR_3 196-256 aa PF23276 TPR_24 198-274 aa PF12854 PPR_1 205-236 aa PF01535 PPR 212-241 aa PF13041 PPR_2 212-256 aa PF17177 PPR_long 229-308 aa PF13041 PPR_2 243-292 aa PF01535 PPR 246-274 aa PF13812 PPR_3 270-325 aa PF12854 PPR_1 276-307 aa PF01535 PPR 282-309 aa PF13041 PPR_2 282-325 aa PF13041 PPR_2 313-359 aa PF13041 PPR_2 348-396 aa PF01535 PPR 351-381 aa PF13812 PPR_3 372-428 aa PF01535 PPR 388-416 aa PF13812 PPR_3 407-466 aa PF12854 PPR_1 415-446 aa PF13041 PPR_2 418-464 aa PF01535 PPR 421-450 aa PF01535 PPR 457-486 aa
XP_057797970.1
636 aa
N
1
318
636
PPR_3
TPR_24
PPR_1
PPR_2
PPR_long
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR_2
PPR
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 126-186 aa PF23276 TPR_24 128-183 aa PF12854 PPR_1 134-167 aa PF13041 PPR_2 138-185 aa PF17177 PPR_long 140-285 aa PF01535 PPR 143-171 aa PF12854 PPR_1 169-201 aa PF13041 PPR_2 175-222 aa PF01535 PPR 176-204 aa PF13812 PPR_3 196-256 aa PF23276 TPR_24 198-274 aa PF12854 PPR_1 205-236 aa PF01535 PPR 212-241 aa PF13041 PPR_2 212-256 aa PF17177 PPR_long 229-308 aa PF13041 PPR_2 243-292 aa PF01535 PPR 246-274 aa PF13812 PPR_3 270-325 aa PF12854 PPR_1 276-307 aa PF01535 PPR 282-309 aa PF13041 PPR_2 282-325 aa PF13041 PPR_2 313-359 aa PF13041 PPR_2 348-396 aa PF01535 PPR 351-381 aa PF13812 PPR_3 372-428 aa PF01535 PPR 388-416 aa PF13812 PPR_3 407-466 aa PF12854 PPR_1 415-446 aa PF13041 PPR_2 418-464 aa PF01535 PPR 421-450 aa PF01535 PPR 457-486 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057797969.1 Pfam PF13812 PPR_3 Repeat 126 186 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797969.1 Pfam PF23276 TPR_24 Repeat 128 183 1.3e-29 103.6 Pentatricopeptide repeat-containing protein
XP_057797969.1 Pfam PF12854 PPR_1 Repeat 134 167 2.1e-77 255.2 PPR repeat
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 138 185 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF17177 PPR_long Repeat 140 285 1.7e-29 103.4 Pentacotripeptide-repeat region of PRORP
XP_057797969.1 Pfam PF01535 PPR Repeat 143 171 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF12854 PPR_1 Repeat 169 201 2.1e-77 255.2 PPR repeat
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 175 222 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF01535 PPR Repeat 176 204 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13812 PPR_3 Repeat 196 256 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797969.1 Pfam PF23276 TPR_24 Repeat 198 274 1.3e-29 103.6 Pentatricopeptide repeat-containing protein
XP_057797969.1 Pfam PF12854 PPR_1 Repeat 205 236 2.1e-77 255.2 PPR repeat
XP_057797969.1 Pfam PF01535 PPR Repeat 212 241 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 212 256 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF17177 PPR_long Repeat 229 308 1.7e-29 103.4 Pentacotripeptide-repeat region of PRORP
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 243 292 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF01535 PPR Repeat 246 274 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13812 PPR_3 Repeat 270 325 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797969.1 Pfam PF12854 PPR_1 Repeat 276 307 2.1e-77 255.2 PPR repeat
XP_057797969.1 Pfam PF01535 PPR Repeat 282 309 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 282 325 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 313 359 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 348 396 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF01535 PPR Repeat 351 381 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13812 PPR_3 Repeat 372 428 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797969.1 Pfam PF01535 PPR Repeat 388 416 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF13812 PPR_3 Repeat 407 466 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797969.1 Pfam PF12854 PPR_1 Repeat 415 446 2.1e-77 255.2 PPR repeat
XP_057797969.1 Pfam PF13041 PPR_2 Repeat 418 464 4.6e-96 315.5 PPR repeat family
XP_057797969.1 Pfam PF01535 PPR Repeat 421 450 1.8e-69 226.0 PPR repeat
XP_057797969.1 Pfam PF01535 PPR Repeat 457 486 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13812 PPR_3 Repeat 126 186 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797970.1 Pfam PF23276 TPR_24 Repeat 128 183 1.3e-29 103.6 Pentatricopeptide repeat-containing protein
XP_057797970.1 Pfam PF12854 PPR_1 Repeat 134 167 2.1e-77 255.2 PPR repeat
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 138 185 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF17177 PPR_long Repeat 140 285 1.7e-29 103.4 Pentacotripeptide-repeat region of PRORP
XP_057797970.1 Pfam PF01535 PPR Repeat 143 171 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF12854 PPR_1 Repeat 169 201 2.1e-77 255.2 PPR repeat
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 175 222 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF01535 PPR Repeat 176 204 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13812 PPR_3 Repeat 196 256 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797970.1 Pfam PF23276 TPR_24 Repeat 198 274 1.3e-29 103.6 Pentatricopeptide repeat-containing protein
XP_057797970.1 Pfam PF12854 PPR_1 Repeat 205 236 2.1e-77 255.2 PPR repeat
XP_057797970.1 Pfam PF01535 PPR Repeat 212 241 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 212 256 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF17177 PPR_long Repeat 229 308 1.7e-29 103.4 Pentacotripeptide-repeat region of PRORP
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 243 292 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF01535 PPR Repeat 246 274 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13812 PPR_3 Repeat 270 325 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797970.1 Pfam PF12854 PPR_1 Repeat 276 307 2.1e-77 255.2 PPR repeat
XP_057797970.1 Pfam PF01535 PPR Repeat 282 309 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 282 325 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 313 359 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 348 396 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF01535 PPR Repeat 351 381 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13812 PPR_3 Repeat 372 428 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797970.1 Pfam PF01535 PPR Repeat 388 416 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF13812 PPR_3 Repeat 407 466 4.4e-60 200.4 Pentatricopeptide repeat domain
XP_057797970.1 Pfam PF12854 PPR_1 Repeat 415 446 2.1e-77 255.2 PPR repeat
XP_057797970.1 Pfam PF13041 PPR_2 Repeat 418 464 4.6e-96 315.5 PPR repeat family
XP_057797970.1 Pfam PF01535 PPR Repeat 421 450 1.8e-69 226.0 PPR repeat
XP_057797970.1 Pfam PF01535 PPR Repeat 457 486 1.8e-69 226.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057941986.1
ATTGACTATATTTTCTGGAGTCCCCTCAACTTCAACTGGCAGCCTCTAATCACAACATGCTGCCACAAAATCTCCAAACTTTTCTTTTATTTTTTGCTCAGTTTCTTGATAACATTGTGTGGATAAGATTGCATTGCATCTGCAACTGTAGTGAAATGCCTCTCTTTCTCTCTCTACCATACAATACTCCGTTTTCACGTCCGCATTTCCACTTCCATGCAAATTGCATCCTCAGGATATCTCCAAAATGAGAAGGCTCT...
XM_057941987.1
CTCTAATCACAACATGCTGCCACAAAATCTCCAAACTTTTCTTTTATTTTTTGCTCAGTTTCTTGATAACATTGTGTGGATAAGATTGCATTGCATCTGCAACTGTAGTGAAATGCCTCTCTTTCTCTCTCTACCATACAATACTCCGTTTTCACGTCCGCATTTCCACTTCCATGCAAATTGCATCCTCAGCCACAGAAGGTTGCTATTTTCTTTCAGAAGACGGATGTAACTCATGGGAGACCATAGTCGGGAAAGTA...

CDS

2 records

下载 CDS FASTA
LOC131014066
ATGGGAGACCATAGTCGGGAAAGTATCCAGTCAATGGCAGTCGGAAAGGAGCAGAATGGATCGATGACGAACAGCGCCAAAGTTGGGCCATCAAACATGGCAGAGCCTCATATGAAAGAGAAGCAAATTCGTTCTTTTTCAGCTCCTCTAAGTTCTCGTAACGAATTTTCCTGCTCATCCTGCTTGAGAAATAGCAGTTGCCAAACAGTTCGTTCAAGAACGAAGTTCATGAATGTTCTGATAGAGAGAGGAAAGCCTCG...
LOC131014066
ATGGGAGACCATAGTCGGGAAAGTATCCAGTCAATGGCAGTCGGAAAGGAGCAGAATGGATCGATGACGAACAGCGCCAAAGTTGGGCCATCAAACATGGCAGAGCCTCATATGAAAGAGAAGCAAATTCGTTCTTTTTCAGCTCCTCTAAGTTCTCGTAACGAATTTTCCTGCTCATCCTGCTTGAGAAATAGCAGTTGCCAAACAGTTCGTTCAAGAACGAAGTTCATGAATGTTCTGATAGAGAGAGGAAAGCCTCG...

Protein

2 records

下载 Protein FASTA
XP_057797969.1
MGDHSRESIQSMAVGKEQNGSMTNSAKVGPSNMAEPHMKEKQIRSFSAPLSSRNEFSCSSCLRNSSCQTVRSRTKFMNVLIERGKPREVPVIFKALVEEGHRPTLVTYTTLLAALTLIKHFKSIASLLSKIERDGLKPDSIFFNAMINAFSESGNTKEAMKIFKKMKEKGCKPTTSTFNTLIKGYGIIGKPEESLKLLDAMLQEHVKPNDRTYNILVRAWCNKGDIEEAWNIVYRMISAGVKPDAVTYNTIAKAYAQKGE...
XP_057797970.1
MGDHSRESIQSMAVGKEQNGSMTNSAKVGPSNMAEPHMKEKQIRSFSAPLSSRNEFSCSSCLRNSSCQTVRSRTKFMNVLIERGKPREVPVIFKALVEEGHRPTLVTYTTLLAALTLIKHFKSIASLLSKIERDGLKPDSIFFNAMINAFSESGNTKEAMKIFKKMKEKGCKPTTSTFNTLIKGYGIIGKPEESLKLLDAMLQEHVKPNDRTYNILVRAWCNKGDIEEAWNIVYRMISAGVKPDAVTYNTIAKAYAQKGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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