当前解析结果
SmilChr03G002092| 统一新 Gene ID | SmilChr03G002092 |
|---|---|
| 名称 | SmilChr03G002092 |
| 描述 | uncharacterized SmilChr03G002092 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 32245226 - 32249298 / - |
| NCBI Gene ID | LOC131014080 |
|---|---|
| GeneID | 131014080 |
| locus_tag | - |
| NCBI Name | LOC131014080 |
| 原始查询 | SmilChr03G002092 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820354]; symbol=AT3G11810; hit=AT3G11810; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820354]; symbol=AT3G11810; hit=AT3G11810; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G11810 (AT3G11810)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820354] identity=41.2; qcov=0.542; evalue=5.6e-27; confidence=medium |
| Rice | Os12g0257500- identity=43.2; qcov=0.47; evalue=9.82e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014080 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057797985.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057797985.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797985.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797985.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797985.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:32246291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B37,C5,C80 |
Chr3:32246321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B15,B44 |
Chr3:32246339 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A7,B137,B23,B30,B45,B70,C16,C33,C37 |
Chr3:32246351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:32246371 |
TC |
T |
1bp_deletion | frameshift_variant | 45 | A11,A21,A3,A9,B1,B100,B105,B109,B115,B121,B126,B127,B16,B22,B23,B25,B34,B4,B48,B50,B56,B58,B60,B63,B67,B7,B80,B96,B98,C1,C31,C34,C36,C51,C56,C62,C64,C66,C74,C77,C8,C80,C82,C87,D8 |
Chr3:32246376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:32246400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,C36,C51,C74 |
Chr3:32246433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B32,B87,C30,C57 |
Chr3:32246463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B6,B64,B81,C24 |
Chr3:32246514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B122,B123,D6 |
Chr3:32246538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,D2 |
Chr3:32246559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。