当前解析结果
SmilChr03G002101| 统一新 Gene ID | SmilChr03G002101 |
|---|---|
| 名称 | SmilChr03G002101 |
| 描述 | linoleate 13S-lipoxygenase 2-1, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 32543759 - 32560923 / + |
| NCBI Gene ID | LOC131014063 |
|---|---|
| GeneID | 131014063 |
| locus_tag | - |
| NCBI Name | LOC131014063 |
| 原始查询 | SmilChr03G002101 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | linoleate 13S-lipoxygenase 2-1, chloroplastic |
| 产物 | linoleate 13S-lipoxygenase 2-1%2C chloroplastic |
| Arabidopsis | AT3G45140 (LOX2)lipoxygenase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823650] identity=55.4; qcov=0.987; evalue=0; confidence=high |
| Rice | Os02g0194700 (OsLOX1)- identity=58.2; qcov=0.932; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen); GO:0034440 (lipid oxidation); GO:0046872 (metal ion binding) |
| KEGG | smil00591 (Linoleic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00305 (Lipoxygenase); PF01477 (PLAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014063 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057797967.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057797967.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057797967.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797967.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:32544066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B16,B2,C19 |
Chr3:32544116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:32544202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:32544207 |
GCC |
G |
2bp_deletion | frameshift_variant | 1 | B17 |
Chr3:32544207 |
GCC |
G |
2bp_deletion | CDS_variant | 1 | B17 |
Chr3:32544253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:32547090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,D9 |
Chr3:32547165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:32553134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B86 |
Chr3:32553154 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | A21,B66 |
Chr3:32553154 |
T |
TC |
1bp_insertion | CDS_variant | 2 | A21,B66 |
Chr3:32558155 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797967.1PF01477
PLAT 133-202 aa
PF00305
Lipoxygenase 215-883 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797967.1 |
Pfam | PF01477 |
PLAT | Domain | 133 | 202 | 7.1e-10 | 40.3 | PLAT/LH2 domain |
XP_057797967.1 |
Pfam | PF00305 |
Lipoxygenase | Domain | 215 | 883 | 0 | 1052.8 | Lipoxygenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。